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  5. Aob_g16408

Aob_g16408


Description : not classified & original description: none


Gene families : OG0002960 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002960_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g16408

Target Alias Description ECC score Gene Family Method Actions
AT2G25320 No alias TRAF-like family protein 0.03 OrthoFinder output from all 47 species
Adi_g040071 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0042.g026935 No alias not classified & original description: CDS=339-5477 0.03 OrthoFinder output from all 47 species
Ceric.02G028800.1 Ceric.02G028800 not classified & original description: pacid=50585664... 0.07 OrthoFinder output from all 47 species
Ceric.07G070900.1 Ceric.07G070900 not classified & original description: pacid=50626059... 0.05 OrthoFinder output from all 47 species
Dcu_g12067 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01035878001 No alias Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
LOC_Os02g39990.1 LOC_Os02g39990 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_10430470g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp8g09710.1 No alias MATH domain and coiled-coil domain-containing protein... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0159.g023847 No alias not classified & original description: CDS=1-5244 0.03 OrthoFinder output from all 47 species
Smo173767 No alias Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Solyc06g017970.4.1 Solyc06g017970 Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e022965_P001 Zm00001e022965 Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR002083 MATH/TRAF_dom 434 540
IPR002083 MATH/TRAF_dom 92 211
IPR002083 MATH/TRAF_dom 584 693
No external refs found!