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Description : scaffold component *(GANP/SAC3) of TREX-2 mRNP trafficking complex & original description: none
Gene families : OG0001595 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001595_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G06290 | No alias | SAC3/GANP/Nin1/mts3/eIF-3 p25 family | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0682.g082025 | No alias | scaffold component *(GANP/SAC3) of TREX-2 mRNP... | 0.02 | OrthoFinder output from all 47 species | |
| Cre02.g143600 | No alias | RNA processing.messenger ribonucleoprotein particle... | 0.01 | OrthoFinder output from all 47 species | |
| Dcu_g05843 | No alias | scaffold component *(GANP/SAC3) of TREX-2 mRNP... | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g20956 | No alias | scaffold component *(GANP/SAC3) of TREX-2 mRNP... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01017853001 | No alias | RNA processing.messenger ribonucleoprotein particle... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os07g45160.1 | LOC_Os07g45160 | scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g26444 | No alias | scaffold component *(GANP/SAC3) of TREX-2 mRNP... | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g14323 | No alias | scaffold component *(GANP/SAC3) of TREX-2 mRNP... | 0.06 | OrthoFinder output from all 47 species | |
| Sam_g50982 | No alias | scaffold component *(GANP/SAC3) of TREX-2 mRNP... | 0.03 | OrthoFinder output from all 47 species | |
| Smo438035 | No alias | RNA processing.messenger ribonucleoprotein particle... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc12g035670.3.1 | Solyc12g035670 | scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex | 0.05 | OrthoFinder output from all 47 species | |
| Tin_g09793 | No alias | scaffold component *(GANP/SAC3) of TREX-2 mRNP... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e035716_P003 | Zm00001e035716 | scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex | 0.06 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | HCCA |
| CC | GO:0005643 | nuclear pore | IEP | HCCA |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | HCCA |
| MF | GO:0008234 | cysteine-type peptidase activity | IEP | HCCA |
| BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
| MF | GO:0017056 | structural constituent of nuclear pore | IEP | HCCA |
| MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | HCCA |
| BP | GO:0046907 | intracellular transport | IEP | HCCA |
| BP | GO:0051169 | nuclear transport | IEP | HCCA |
| BP | GO:0051641 | cellular localization | IEP | HCCA |
| BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
| BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
| MF | GO:0101005 | deubiquitinase activity | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR005062 | SAC3/GANP/THP3_conserved | 404 | 697 |
| No external refs found! |