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  5. Aob_g08435

Aob_g08435 (ATLIG1, LIG1)


Aliases : ATLIG1, LIG1

Description : EC_6.5 ligase forming phosphoric ester bond & original description: none


Gene families : OG0001904 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001904_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g08435
Cluster HCCA: Cluster_154

Target Alias Description ECC score Gene Family Method Actions
Aev_g20608 AtLIG6, LIG6 EC_6.5 ligase forming phosphoric ester bond & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021312.62 No alias No description available 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003910 DNA ligase (ATP) activity IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
BP GO:0006310 DNA recombination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006810 transport IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR012308 DNA_ligase_ATP-dep_N 122 298
IPR012310 DNA_ligase_ATP-dep_cent 364 568
IPR012309 DNA_ligase_ATP-dep_C 593 704
No external refs found!