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  5. Aob_g08315

Aob_g08315 (UBP1B)


Aliases : UBP1B

Description : stress granule assembly factor *(UBP1) & original description: none


Gene families : OG0002014 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002014_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g08315

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00204100 evm_27.TU.AmTr_v1... Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia 0.02 OrthoFinder output from all 47 species
Adi_g082035 UBP1A stress granule assembly factor *(UBP1) & original... 0.02 OrthoFinder output from all 47 species
Adi_g108822 UBP1A not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene26072.t1 UBP1B, Aspi01Gene26072 stress granule assembly factor *(UBP1) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene47503.t1 UBP1B, Aspi01Gene47503 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0743.g084783 UBP1B stress granule assembly factor *(UBP1) & original... 0.01 OrthoFinder output from all 47 species
Cba_g17426 UBP1B stress granule assembly factor *(UBP1) & original... 0.03 OrthoFinder output from all 47 species
Ceric.26G052800.1 UBP1B, Ceric.26G052800 stress granule assembly factor *(UBP1) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01015040001 UBP1B Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia 0.02 OrthoFinder output from all 47 species
Gb_34763 UBP1B mRNA-binding regulatory factor (UBP1) 0.03 OrthoFinder output from all 47 species
Lfl_g04699 UBP1B stress granule assembly factor *(UBP1) & original... 0.05 OrthoFinder output from all 47 species
MA_5673967g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp1g10220.1 UBP1B mRNA-binding regulatory factor (UBP1) 0.02 OrthoFinder output from all 47 species
Msp_g16815 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g03213 UBP1B stress granule assembly factor *(UBP1) & original... 0.04 OrthoFinder output from all 47 species
Pir_g12923 UBP1B stress granule assembly factor *(UBP1) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g03391 UBP1B stress granule assembly factor *(UBP1) & original... 0.02 OrthoFinder output from all 47 species
Pnu_g07308 UBP1B stress granule assembly factor *(UBP1) & original... 0.02 OrthoFinder output from all 47 species
Sam_g28502 No alias stress granule assembly factor *(UBP1) & original... 0.03 OrthoFinder output from all 47 species
Solyc06g063000.3.1 UBP1B, Solyc06g063000 mRNA-binding regulatory factor (UBP1) 0.02 OrthoFinder output from all 47 species
Spa_g19380 UBP1B stress granule assembly factor *(UBP1) & original... 0.02 OrthoFinder output from all 47 species
Spa_g55637 UBP1B stress granule assembly factor *(UBP1) & original... 0.03 OrthoFinder output from all 47 species
Tin_g27439 UBP1B stress granule assembly factor *(UBP1) & original... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 80 145
IPR000504 RRM_dom 165 235
IPR000504 RRM_dom 305 370
No external refs found!