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  5. Aob_g07350

Aob_g07350 (CRM3, HCF152)


Aliases : CRM3, HCF152

Description : plastidial transcript stability factor *(HCF152) & original description: none


Gene families : OG0001501 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001501_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g07350

Target Alias Description ECC score Gene Family Method Actions
Aev_g20509 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.04 OrthoFinder output from all 47 species
Cba_g11157 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.03 OrthoFinder output from all 47 species
Dde_g02920 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.02 OrthoFinder output from all 47 species
Ehy_g23058 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.03 OrthoFinder output from all 47 species
Gb_16885 CRM3, HCF152 HCF152 plastidial RNA transcript stability factor 0.03 OrthoFinder output from all 47 species
LOC_Os12g01210.1 CRM3, HCF152,... HCF152 plastidial RNA transcript stability factor 0.05 OrthoFinder output from all 47 species
Lfl_g03303 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.03 OrthoFinder output from all 47 species
MA_11675g0010 CRM3, HCF152 HCF152 plastidial RNA transcript stability factor 0.02 OrthoFinder output from all 47 species
Nbi_g15156 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.04 OrthoFinder output from all 47 species
Ppi_g10279 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.02 OrthoFinder output from all 47 species
Sam_g12051 No alias plastidial transcript stability factor *(HCF152) &... 0.03 OrthoFinder output from all 47 species
Smo82002 CRM3, HCF152 RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
Tin_g06672 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.02 OrthoFinder output from all 47 species
Tin_g24136 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.02 OrthoFinder output from all 47 species
Zm00001e020088_P001 CRM3, HCF152,... HCF152 plastidial RNA transcript stability factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 546 604
IPR002885 Pentatricopeptide_repeat 629 675
IPR002885 Pentatricopeptide_repeat 282 327
IPR002885 Pentatricopeptide_repeat 487 536
No external refs found!