Aob_g07053

Description : component *(uS5) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0001457 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001457_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aob_g07053

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00212950	XW6,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
AT2G41840	No alias	Ribosomal protein S5 family protein	0.02	OrthoFinder output from all 47 species
Aev_g07498	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aev_g10214	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aop_g09364	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cba_g21908	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Cre01.g039250	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Len_g08427	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g00692	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
MA_37929g0010	No alias	40S ribosomal protein S2-2 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Mp5g15970.1	No alias	component RPS2 of SSU proteome	0.02	OrthoFinder output from all 47 species
Msp_g10873	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Nbi_g03400	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ore_g03081	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pp3c20_18740V3.1	Pp3c20_18740	Ribosomal protein S5 family protein	0.01	OrthoFinder output from all 47 species
Ppi_g31430	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sam_g05634	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005681	spliceosomal complex	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
MF	GO:0008097	5S rRNA binding	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005324	Ribosomal_S5_C	170	242
IPR013810	Ribosomal_S5_N	86	150

External Links

No external refs found!

Aob_g07053

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation