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Aob_g06713 (PUM1, APUM1)


Aliases : PUM1, APUM1

Description : not classified & original description: none


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g06713

Target Alias Description ECC score Gene Family Method Actions
AT2G29140 PUM3, APUM3 pumilio 3 0.02 OrthoFinder output from all 47 species
AT2G29200 PUM1, APUM1 pumilio 1 0.03 OrthoFinder output from all 47 species
Adi_g025756 APUM6, PUM6 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g075414 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g07329 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g10980 PUM1, APUM1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g61874 APUM4, PUM4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene56545.t1 PUM3, APUM3,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene56546.t1 APUM4, PUM4,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene61420.t1 PUM1, APUM1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000860 PUM1, APUM1 not classified & original description: CDS=178-3375 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001065.15 PUM5, APUM5 No description available 0.02 OrthoFinder output from all 47 species
Dac_g27807 PUM3, APUM3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g48916 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g02392 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g27341 APUM2, PUM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os01g74030.1 PUM1, APUM1,... Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os04g12480.1 APUM4, PUM4,... Pumilio homolog 3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Pir_g01375 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species ssDNA-binding protein *(OSB) & original description: none
Sacu_v1.1_s0014.g006119 No alias phospholipase-A1 *(PC-PLA1) & original description: CDS=1-4779 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0164.g024072 APUM6, PUM6 not classified & original description: CDS=170-874 0.02 OrthoFinder output from all 47 species
Sam_g16358 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e027653_P001 PUM1, APUM1,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e029661_P001 APUM2, PUM2,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 850 881
IPR001313 Pumilio_RNA-bd_rpt 813 847
IPR001313 Pumilio_RNA-bd_rpt 885 918
IPR001313 Pumilio_RNA-bd_rpt 928 937
IPR012940 NABP 393 807
No external refs found!