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  5. Aob_g06472

Aob_g06472 (HCF136)


Aliases : HCF136

Description : protein involved in PS-II assembly *(HCF136) & original description: none


Gene families : OG0006586 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006586_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g06472
Cluster HCCA: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00083110 HCF136,... Photosynthesis.photophosphorylation.photosystem... 0.04 OrthoFinder output from all 47 species
AT5G23120 HCF136 photosystem II stability/assembly factor, chloroplast (HCF136) 0.07 OrthoFinder output from all 47 species
Adi_g023753 HCF136 protein involved in PS-II assembly *(HCF136) & original... 0.05 OrthoFinder output from all 47 species
Ala_g31805 HCF136 protein involved in PS-II assembly *(HCF136) & original... 0.06 OrthoFinder output from all 47 species
Als_g23347 HCF136 protein involved in PS-II assembly *(HCF136) & original... 0.06 OrthoFinder output from all 47 species
Aop_g09964 HCF136 protein involved in PS-II assembly *(HCF136) & original... 0.03 OrthoFinder output from all 47 species
Cba_g19514 HCF136 protein involved in PS-II assembly *(HCF136) & original... 0.06 OrthoFinder output from all 47 species
Ceric.10G037400.1 HCF136, Ceric.10G037400 protein involved in PS-II assembly *(HCF136) & original... 0.07 OrthoFinder output from all 47 species
Cre06.g273700 HCF136 Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
Dac_g14607 HCF136 protein involved in PS-II assembly *(HCF136) & original... 0.07 OrthoFinder output from all 47 species
Dcu_g01147 HCF136 protein involved in PS-II assembly *(HCF136) & original... 0.06 OrthoFinder output from all 47 species
Dde_g00586 HCF136 protein involved in PS-II assembly *(HCF136) & original... 0.06 OrthoFinder output from all 47 species
Ehy_g20509 HCF136 protein involved in PS-II assembly *(HCF136) & original... 0.09 OrthoFinder output from all 47 species
GSVIVT01012045001 HCF136 Photosynthesis.photophosphorylation.photosystem... 0.07 OrthoFinder output from all 47 species
Gb_03750 HCF136 HCF136 protein involved in PS-II assembly 0.06 OrthoFinder output from all 47 species
Len_g11400 HCF136 protein involved in PS-II assembly *(HCF136) & original... 0.08 OrthoFinder output from all 47 species
Lfl_g02953 HCF136 protein involved in PS-II assembly *(HCF136) & original... 0.05 OrthoFinder output from all 47 species
MA_10433328g0010 HCF136 HCF136 protein involved in PS-II assembly 0.05 OrthoFinder output from all 47 species
Mp4g23900.1 HCF136 HCF136 protein involved in PS-II assembly 0.07 OrthoFinder output from all 47 species
Msp_g03512 HCF136 protein involved in PS-II assembly *(HCF136) & original... 0.04 OrthoFinder output from all 47 species
Nbi_g14696 HCF136 protein involved in PS-II assembly *(HCF136) & original... 0.04 OrthoFinder output from all 47 species
Ore_g40589 HCF136 protein involved in PS-II assembly *(HCF136) & original... 0.07 OrthoFinder output from all 47 species
Pir_g10204 HCF136 protein involved in PS-II assembly *(HCF136) & original... 0.09 OrthoFinder output from all 47 species
Pnu_g05859 HCF136 protein involved in PS-II assembly *(HCF136) & original... 0.04 OrthoFinder output from all 47 species
Ppi_g00841 HCF136 protein involved in PS-II assembly *(HCF136) & original... 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009047 HCF136 protein involved in PS-II assembly *(HCF136) & original... 0.08 OrthoFinder output from all 47 species
Sam_g07654 No alias protein involved in PS-II assembly *(HCF136) & original... 0.05 OrthoFinder output from all 47 species
Smo227615 HCF136 Photosynthesis.photophosphorylation.photosystem... 0.05 OrthoFinder output from all 47 species
Solyc02g014150.4.1 HCF136, Solyc02g014150 HCF136 protein involved in PS-II assembly 0.07 OrthoFinder output from all 47 species
Spa_g12995 HCF136 protein involved in PS-II assembly *(HCF136) & original... 0.06 OrthoFinder output from all 47 species
Tin_g11749 HCF136 protein involved in PS-II assembly *(HCF136) & original... 0.07 OrthoFinder output from all 47 species
Zm00001e030125_P002 HCF136, Zm00001e030125 HCF136 protein involved in PS-II assembly 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004144 diacylglycerol O-acyltransferase activity IEP HCCA
MF GO:0004332 fructose-bisphosphate aldolase activity IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016411 acylglycerol O-acyltransferase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0051743 red chlorophyll catabolite reductase activity IEP HCCA
MF GO:0051920 peroxiredoxin activity IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
InterPro domains Description Start Stop
IPR028203 PSII_CF48-like_dom 93 412
No external refs found!