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  5. Aob_g06081

Aob_g06081


Description : actin stability co-factor *(PMIR) & original description: none


Gene families : OG0001272 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001272_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g06081
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00107090 PMI1,... Cytoskeleton.cp-actin-dependent plastid... 0.03 OrthoFinder output from all 47 species
Adi_g058455 No alias actin stability co-factor *(PMIR) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g20246 No alias actin stability co-factor *(PMIR) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22592 No alias actin stability co-factor *(PMIR) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g02621 No alias actin stability co-factor *(PMIR) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g37984 No alias actin stability co-factor *(PMIR) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.16G005400.1 Ceric.16G005400 actin stability co-factor *(PMIR) & original... 0.03 OrthoFinder output from all 47 species
Ceric.32G018400.1 PMI1, Ceric.32G018400 actin stability co-factor *(PMIR) & original... 0.02 OrthoFinder output from all 47 species
Ceric.35G017200.1 Ceric.35G017200 actin stability co-factor *(PMIR) & original... 0.03 OrthoFinder output from all 47 species
Dac_g11129 No alias actin stability co-factor *(PMIR) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09253 No alias actin stability co-factor *(PMIR) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01013417001 PMI1 Cytoskeleton.cp-actin-dependent plastid... 0.03 OrthoFinder output from all 47 species
Lfl_g12843 No alias actin stability co-factor *(PMIR) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g17701 PMI1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10427730g0010 PMI1 actin stability factor (PMI1/PMI15). actin stability... 0.02 OrthoFinder output from all 47 species
Mp2g25860.1 No alias actin stability factor (PMI1/PMI15). actin stability... 0.02 OrthoFinder output from all 47 species
Msp_g19859 No alias actin stability co-factor *(PMIR) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g36313 No alias actin stability co-factor *(PMIR) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g37676 PMI1 actin stability factor *(PMI1) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g10117 No alias actin stability co-factor *(PMIR) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g17949 No alias actin stability co-factor *(PMIR) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g30544 No alias actin stability co-factor *(PMIR) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g13997 No alias acTin stability co-factor *(PMIR) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e034908_P002 PMI1, Zm00001e034908 actin stability factor (PMI1/PMI15) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR018392 LysM_dom 1343 1387
IPR019448 NT-C2 213 363
No external refs found!