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  5. Aob_g05330

Aob_g05330


Description : E3 ubiquitin ligase *(SR1) & original description: none


Gene families : OG0001832 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001832_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g05330

Target Alias Description ECC score Gene Family Method Actions
Adi_g117297 No alias E3 ubiquitin ligase *(SR1) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g32084 No alias E3 ubiquitin ligase *(SR1) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene45811.t1 Aspi01Gene45811 E3 ubiquitin ligase *(SR1) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g01294 No alias E3 ubiquitin ligase *(SR1) & original description: none 0.03 OrthoFinder output from all 47 species
Cre12.g528400 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.01 OrthoFinder output from all 47 species
Dac_g14529 No alias E3 ubiquitin ligase *(SR1) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08245 No alias E3 ubiquitin ligase *(SR1) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01028201001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 OrthoFinder output from all 47 species
LOC_Os05g19970.1 LOC_Os05g19970 C2H2 zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Ore_g17227 No alias E3 ubiquitin ligase *(SR1) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g20079 No alias E3 ubiquitin ligase *(SR1) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g46349 No alias E3 ubiquitin ligase *(SR1) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27074 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g10416 No alias E3 ubiquiTin ligase *(SR1) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 742 765
No external refs found!