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  5. Aob_g04313

Aob_g04313


Description : component *(SF3B2) of splicing factor 3B complex & original description: none


Gene families : OG0004021 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004021_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g04313

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00248990 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Adi_g080818 No alias component *(SF3B2) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Ala_g23643 No alias component *(SF3B2) of splicing factor 3B complex &... 0.06 OrthoFinder output from all 47 species
Aop_g29274 No alias component *(SF3B2) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Dac_g29869 No alias component *(SF3B2) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Ehy_g17357 No alias component *(SF3B2) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Lfl_g38051 No alias component *(SF3B2) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Mp7g16820.1 No alias component SF3B2 of splicing factor 3B complex 0.05 OrthoFinder output from all 47 species
Msp_g32567 No alias component *(SF3B2) of splicing factor 3B complex &... 0.07 OrthoFinder output from all 47 species
Ore_g43719 No alias component *(SF3B2) of splicing factor 3B complex &... 0.06 OrthoFinder output from all 47 species
Sam_g19730 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo232603 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Solyc02g078610.4.1 Solyc02g078610 component SF3B2 of splicing factor 3B complex 0.02 OrthoFinder output from all 47 species
Spa_g09832 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56443 No alias component *(SF3B2) of splicing factor 3B complex &... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007180 DUF382 175 300
IPR006568 PSP_pro-rich 309 353
No external refs found!