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  5. Aob_g04282

Aob_g04282 (VIM1, ORTH2)


Aliases : VIM1, ORTH2

Description : regulatory E3 ubiquitin ligase (ORTH/VIM) of RNA-independent DNA methylation & original description: none


Gene families : OG0003058 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003058_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g04282

Target Alias Description ECC score Gene Family Method Actions
AT1G66050 VIM2, ORTH5 Zinc finger (C3HC4-type RING finger) family protein 0.02 OrthoFinder output from all 47 species
Adi_g085235 VIM1, ORTH2 regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.03 OrthoFinder output from all 47 species
Ala_g16034 VIM1, ORTH2 regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.03 OrthoFinder output from all 47 species
LOC_Os05g01230.1 VIM1, ORTH2,... E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Mp1g04780.1 VIM1, ORTH2 E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 12 58
IPR003105 SRA_YDG 268 416
IPR027370 Znf-RING_euk 500 529
No external refs found!