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Description : not classified & original description: none
Gene families : OG0007327 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007327_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Aob_g03663 | |
| Cluster | HCCA: Cluster_123 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| ATCG00380 | RPS4 | chloroplast ribosomal protein S4 | 0.11 | OrthoFinder output from all 47 species | |
| Aev_g09926 | No alias | not classified & original description: none | 0.16 | OrthoFinder output from all 47 species | |
| Aev_g45669 | RPS4 | component *(uS4c) of small plastid ribosomal-subunit... | 0.05 | OrthoFinder output from all 47 species | |
| Aop_g38513 | RPS4 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g77949 | RPS4 | not classified & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Ceric.02G013600.1 | RPS4, Ceric.02G013600 | component *(uS4c) of small plastid ribosomal-subunit... | 0.11 | OrthoFinder output from all 47 species | |
| Ceric.09G048000.1 | RPS4, Ceric.09G048000 | component *(uS4c) of small plastid ribosomal-subunit... | 0.16 | OrthoFinder output from all 47 species | |
| GSVIVT01021975001 | No alias | Protein biosynthesis.organelle translation... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_06832 | No alias | component psRPS4 of small ribosomal subunit proteome | 0.1 | OrthoFinder output from all 47 species | |
| Gb_11360 | RPS4 | component psRPS4 of small ribosomal subunit proteome | 0.08 | OrthoFinder output from all 47 species | |
| LOC_Os04g16738.1 | RPS4, LOC_Os04g16738 | component psRPS4 of small ribosomal subunit proteome | 0.16 | OrthoFinder output from all 47 species | |
| LOC_Os04g16764.1 | RPS4, LOC_Os04g16764 | component psRPS4 of small ribosomal subunit proteome | 0.16 | OrthoFinder output from all 47 species | |
| LOC_Os10g38214.1 | RPS4, LOC_Os10g38214 | component psRPS4 of small ribosomal subunit proteome | 0.16 | OrthoFinder output from all 47 species | |
| Nbi_g01687 | RPS4 | not classified & original description: none | 0.12 | OrthoFinder output from all 47 species | |
| Ore_g23778 | RPS4 | component *(uS4c) of small plastid ribosomal-subunit... | 0.06 | OrthoFinder output from all 47 species | |
| Sam_g38172 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Solyc00g500212.1.1 | RPS4, Solyc00g500212 | component psRPS4 of small ribosomal subunit proteome | 0.04 | OrthoFinder output from all 47 species | |
| Solyc09g015330.2.1 | Solyc09g015330 | no hits & (original description: none) | 0.05 | OrthoFinder output from all 47 species | |
| Solyc11g022610.1.1 | RPS4, Solyc11g022610 | 30S ribosomal protein S4, chloroplastic OS=Solanum... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc11g022620.1.1 | Solyc11g022620 | 30S ribosomal protein S4, chloroplastic OS=Nicotiana... | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g55822 | RPS4 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e003895_P001 | RPS4, Zm00001e003895 | component psRPS4 of small ribosomal subunit proteome | 0.1 | OrthoFinder output from all 47 species | |
| Zm00001e003897_P001 | RPS4, Zm00001e003897 | component psRPS4 of small ribosomal subunit proteome | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e003908_P001 | RPS4, Zm00001e003908 | component psRPS4 of small ribosomal subunit proteome | 0.1 | OrthoFinder output from all 47 species | |
| Zm00001e013560_P001 | RPS4, Zm00001e013560 | component psRPS4 of small ribosomal subunit proteome | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e042033_P001 | RPS4, Zm00001e042033 | component psRPS4 of small ribosomal subunit proteome | 0.1 | OrthoFinder output from all 47 species | |
| Zm00001e042054_P001 | RPS4, Zm00001e042054 | component psRPS4 of small ribosomal subunit proteome | 0.1 | OrthoFinder output from all 47 species | |
| Zm00001e042078_P001 | RPS4, Zm00001e042078 | component psRPS4 of small ribosomal subunit proteome | 0.1 | OrthoFinder output from all 47 species | |
| Zm00001e042098_P001 | RPS4, Zm00001e042098 | component psRPS4 of small ribosomal subunit proteome | 0.1 | OrthoFinder output from all 47 species | |
| Zm00001e042353_P001 | RPS4, Zm00001e042353 | component psRPS4 of small ribosomal subunit proteome | 0.1 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |