Aob_g03612 (CTS, ACN2, PED3, AtABCD1, PXA1)

Aliases : CTS, ACN2, PED3, AtABCD1, PXA1

Description : subfamily ABCD transporter & original description: none

Gene families : OG0003180 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003180_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aob_g03612

Target	Alias	Description	ECC score	Gene Family Method
AT4G39850	CTS, ACN2, PED3,...	peroxisomal ABC transporter 1	0.02	OrthoFinder output from all 47 species
Adi_g020091	CTS, ACN2, PED3,...	subfamily ABCD transporter & original description: none	0.03	OrthoFinder output from all 47 species
Als_g30641	CTS, ACN2, PED3,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene62794.t1	CTS, ACN2, PED3,...	subfamily ABCD transporter & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0048.g030599	CTS, ACN2, PED3,...	subfamily ABCD transporter & original description: CDS=293-4504	0.03	OrthoFinder output from all 47 species
LOC_Os01g73530.2	CTS, ACN2, PED3,...	peroxisomal fatty acid transporter (PXA1). subfamily...	0.03	OrthoFinder output from all 47 species
LOC_Os05g01700.1	CTS, ACN2, PED3,...	peroxisomal fatty acid transporter (PXA1). subfamily...	0.02	OrthoFinder output from all 47 species
Lfl_g02451	CTS, ACN2, PED3,...	subfamily ABCD transporter & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g22841	CTS, ACN2, PED3,...	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Pnu_g20995	CTS, ACN2, PED3,...	subfamily ABCD transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g05350	CTS, ACN2, PED3,...	subfamily ABCD transporter & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140359	ABC-type transporter activity	IEA	Interproscan
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000270	peptidoglycan metabolic process	IEP	HCCA
MF	GO:0003796	lysozyme activity	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004499	N,N-dimethylaniline monooxygenase activity	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
MF	GO:0005384	manganese ion transmembrane transporter activity	IEP	HCCA
BP	GO:0006022	aminoglycan metabolic process	IEP	HCCA
BP	GO:0006026	aminoglycan catabolic process	IEP	HCCA
BP	GO:0006027	glycosaminoglycan catabolic process	IEP	HCCA
BP	GO:0006873	cellular monoatomic ion homeostasis	IEP	HCCA
BP	GO:0006875	cellular metal ion homeostasis	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008198	ferrous iron binding	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009253	peptidoglycan catabolic process	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	HCCA
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	HCCA
BP	GO:0019725	cellular homeostasis	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
BP	GO:0030003	cellular monoatomic cation homeostasis	IEP	HCCA
BP	GO:0030026	cellular manganese ion homeostasis	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030127	COPII vesicle coat	IEP	HCCA
BP	GO:0030203	glycosaminoglycan metabolic process	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0042592	homeostatic process	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0046916	cellular transition metal ion homeostasis	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0048878	chemical homeostasis	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
MF	GO:0050661	NADP binding	IEP	HCCA
BP	GO:0050801	monoatomic ion homeostasis	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0055065	metal ion homeostasis	IEP	HCCA
BP	GO:0055071	manganese ion homeostasis	IEP	HCCA
BP	GO:0055076	transition metal ion homeostasis	IEP	HCCA
BP	GO:0055080	monoatomic cation homeostasis	IEP	HCCA
BP	GO:0055082	cellular chemical homeostasis	IEP	HCCA
MF	GO:0061783	peptidoglycan muralytic activity	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0098771	inorganic ion homeostasis	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	1128	1294
IPR003439	ABC_transporter-like_ATP-bd	465	610
IPR011527	ABC1_TM_dom	749	1015
IPR011527	ABC1_TM_dom	92	360

External Links

No external refs found!

Aob_g03612 (CTS, ACN2, PED3, AtABCD1, PXA1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation