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  5. Aob_g03580

Aob_g03580


Description : associated component *(HDC1) of histone deacetylase machineries & original description: none


Gene families : OG0004198 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004198_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g03580

Target Alias Description ECC score Gene Family Method Actions
Adi_g011656 No alias associated component *(HDC1) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Aev_g05483 No alias associated component *(HDC1) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Aspi01Gene47291.t1 Aspi01Gene47291 associated component *(HDC1) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Dcu_g03126 No alias associated component *(HDC1) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
GSVIVT01000253001 No alias Chromatin organisation.histone modifications.histone... 0.04 OrthoFinder output from all 47 species
Lfl_g10369 No alias associated component *(HDC1) of histone deacetylase... 0.06 OrthoFinder output from all 47 species
MA_18046g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp3g12140.1 No alias associated component HDC1/Rxt3 of histone deacetylase machineries 0.02 OrthoFinder output from all 47 species
Ore_g06630 No alias associated component *(HDC1) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Ppi_g03202 No alias associated component *(HDC1) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Sam_g36521 No alias associated component *(HDC1) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Solyc05g056340.3.1 Solyc05g056340 associated component HDC1/Rxt3 of histone deacetylase machineries 0.02 OrthoFinder output from all 47 species
Spa_g15395 No alias associated component *(HDC1) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Tin_g13819 No alias associated component *(HDC1) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Zm00001e010714_P003 Zm00001e010714 associated component HDC1/Rxt3 of histone deacetylase machineries 0.04 OrthoFinder output from all 47 species
Zm00001e022328_P001 Zm00001e022328 associated component HDC1/Rxt3 of histone deacetylase machineries 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0016575 histone deacetylation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
InterPro domains Description Start Stop
IPR013951 Rxt3 500 542
No external refs found!