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  5. Aob_g03552

Aob_g03552 (VAN3, SFC, AGD3)


Aliases : VAN3, SFC, AGD3

Description : class I ARF-GAP ARF-GTPase-activating protein & original description: none


Gene families : OG0002309 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002309_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g03552

Target Alias Description ECC score Gene Family Method Actions
AT5G61980 AGD1 ARF-GAP domain 1 0.05 OrthoFinder output from all 47 species
Aev_g02576 VAN3, SFC, AGD3 class I ARF-GAP ARF-GTPase-activating protein & original... 0.03 OrthoFinder output from all 47 species
Ala_g02481 VAN3, SFC, AGD3 class I ARF-GAP ARF-GTPase-activating protein & original... 0.03 OrthoFinder output from all 47 species
Ala_g19622 VAN3, SFC, AGD3 class I ARF-GAP ARF-GTPase-activating protein & original... 0.02 OrthoFinder output from all 47 species
Dcu_g11040 VAN3, SFC, AGD3 class I ARF-GAP ARF-GTPase-activating protein & original... 0.04 OrthoFinder output from all 47 species
Ehy_g06174 VAN3, SFC, AGD3 class I ARF-GAP ARF-GTPase-activating protein & original... 0.03 OrthoFinder output from all 47 species
Ehy_g23167 VAN3, SFC, AGD3 class I ARF-GAP ARF-GTPase-activating protein & original... 0.04 OrthoFinder output from all 47 species
Ehy_g27446 VAN3, SFC, AGD3 class I ARF-GAP ARF-GTPase-activating protein & original... 0.02 OrthoFinder output from all 47 species
Len_g16331 VAN3, SFC, AGD3 class I ARF-GAP ARF-GTPase-activating protein & original... 0.02 OrthoFinder output from all 47 species
Lfl_g11485 VAN3, SFC, AGD3 class I ARF-GAP ARF-GTPase-activating protein & original... 0.04 OrthoFinder output from all 47 species
MA_12739g0010 AGD2 ADP-ribosylation factor GTPase-activating protein AGD3... 0.01 OrthoFinder output from all 47 species
Msp_g13257 VAN3, SFC, AGD3 class I ARF-GAP ARF-GTPase-activating protein & original... 0.03 OrthoFinder output from all 47 species
Msp_g28107 VAN3, SFC, AGD3 class I ARF-GAP ARF-GTPase-activating protein & original... 0.03 OrthoFinder output from all 47 species
Pir_g02000 VAN3, SFC, AGD3 class I ARF-GAP ARF-GTPase-activating protein & original... 0.03 OrthoFinder output from all 47 species
Solyc04g008660.4.1 AGD2, Solyc04g008660 class I ARF-GAP ARF-GTPase-activating protein 0.02 OrthoFinder output from all 47 species
Spa_g18891 VAN3, SFC, AGD3 class I ARF-GAP ARF-GTPase-activating protein & original... 0.03 OrthoFinder output from all 47 species
Zm00001e023047_P001 AGD2, Zm00001e023047 ADP-ribosylation factor GTPase-activating protein AGD2... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005096 GTPase activator activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
MF GO:0015095 magnesium ion transmembrane transporter activity IEP HCCA
BP GO:0015693 magnesium ion transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
InterPro domains Description Start Stop
IPR001849 PH_domain 294 428
IPR002110 Ankyrin_rpt 758 824
IPR001164 ArfGAP_dom 507 648
No external refs found!