1. Home
  2. Species
  3. Abrodictyum obscurum
  4. Sequence
  5. Aob_g02581

Aob_g02581 (RAT5, HTA1, ATHTA1)


Aliases : RAT5, HTA1, ATHTA1

Description : histone *(H2A) & original description: none


Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g02581
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
Adi_g011159 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g01852 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g39464 HTA6 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g27356 HTA6 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g37648 RAT5, HTA1, ATHTA1 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g62913 GAMMA-H2AX,... histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g01994 HTA7 histone *(H2A) & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g09993 GAMMA-H2AX,... histone *(H2A) & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g54113 HTA7 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene00233.t1 GAMMA-H2AX,... histone *(H2A) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene10197.t1 RAT5, HTA1,... histone *(H2A) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene26194.t1 HTA6, Aspi01Gene26194 histone *(H2A) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene56024.t1 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene56417.t1 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene61578.t1 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.06G072800.1 GAMMA-H2AX,... histone *(H2A) & original description: pacid=50620340... 0.04 OrthoFinder output from all 47 species
Ceric.26G005600.1 GAMMA-H2AX,... histone *(H2A) & original description: pacid=50599432... 0.01 OrthoFinder output from all 47 species
Ceric.26G005800.1 GAMMA-H2AX,... histone *(H2A) & original description: pacid=50599346... 0.01 OrthoFinder output from all 47 species
Dac_g03954 GAMMA-H2AX,... histone *(H2A) & original description: none 0.08 OrthoFinder output from all 47 species
Dac_g12240 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g15493 HTA6 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g41938 HTA6 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g04999 GAMMA-H2AX,... histone *(H2A) & original description: none 0.11 OrthoFinder output from all 47 species
Len_g37716 GAMMA-H2AX,... histone *(H2A) & original description: none 0.01 OrthoFinder output from all 47 species
MA_213048g0010 HTA7 histone (H2A) 0.03 OrthoFinder output from all 47 species
MA_74667g0010 HTA7 histone (H2A) 0.04 OrthoFinder output from all 47 species
Nbi_g06551 HTA7 histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g09279 HTA7 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g09402 HTA7 histone *(H2A) & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g09403 HTA7 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g27681 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g39648 GAMMA-H2AX,... histone *(H2A) & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g40966 HTA2 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16547 HTA6 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g42912 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g58817 RAT5, HTA1, ATHTA1 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g64775 RAT5, HTA1, ATHTA1 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g02237 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g10951 HTA6 histone *(H2A) & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g01683 GAMMA-H2AX,... histone *(H2A) & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g43135 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000823 GAMMA-H2AX,... histone *(H2A) & original description: CDS=1-471 0.1 OrthoFinder output from all 47 species
Smo76653 HTA2 Chromatin organisation.histones.H2A-type histone 0.01 OrthoFinder output from all 47 species
Spa_g03889 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g17437 HTA10 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g32347 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g32923 HTA6 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g14389 HTA7 histone *(H2A) & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 9 86
IPR032454 Histone_H2A_C 89 123
No external refs found!