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  5. Aob_g02392

Aob_g02392


Description : CAMTA-type transcription factor & original description: none


Gene families : OG0000648 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000648_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g02392

Target Alias Description ECC score Gene Family Method Actions
Adi_g016712 No alias CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g022445 No alias CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g085085 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g13747 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06416 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g08814 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g16617 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07073 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g14066 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g16420 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.07G061900.1 Ceric.07G061900 CAMTA-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g07496 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g06503 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Gb_35291 No alias transcription factor (CAMTA) 0.03 OrthoFinder output from all 47 species
Lfl_g12851 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
MA_10434871g0010 No alias transcription factor (CAMTA) 0.02 OrthoFinder output from all 47 species
MA_16615g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g17074 No alias CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g10857 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11140 No alias CAMTA-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0034511 U3 snoRNA binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002110 Ankyrin_rpt 790 879
IPR005559 CG-1_dom 24 136
IPR000048 IQ_motif_EF-hand-BS 1000 1019
IPR000048 IQ_motif_EF-hand-BS 1025 1043
No external refs found!