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  5. Aob_g02332

Aob_g02332 (HUB2)


Aliases : HUB2

Description : E3 ubiquitin ligase *(HUB) & original description: none


Gene families : OG0001584 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001584_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g02332

Target Alias Description ECC score Gene Family Method Actions
AT1G55250 HUB2 histone mono-ubiquitination 2 0.03 OrthoFinder output from all 47 species
Adi_g088507 RDO4, HUB1 E3 ubiquitin ligase *(HUB) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g104742 HUB2 E3 ubiquitin ligase *(HUB) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02632 HUB2 E3 ubiquitin ligase *(HUB) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g13983 HUB2 E3 ubiquitin ligase *(HUB) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09718 RDO4, HUB1 E3 ubiquitin ligase *(HUB) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0079.g038425 HUB2 E3 ubiquitin ligase *(HUB) & original description: CDS=1-2559 0.03 OrthoFinder output from all 47 species
Cba_g10519 HUB2 E3 ubiquitin ligase *(HUB) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g32079 HUB2 E3 ubiquitin ligase *(HUB) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.14G031800.1 RDO4, HUB1,... E3 ubiquitin ligase *(HUB) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.21G031900.1 HUB2, Ceric.21G031900 E3 ubiquitin ligase *(HUB) & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000169.18 HUB2 Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
Dac_g03836 RDO4, HUB1 E3 ubiquitin ligase *(HUB) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g04023 HUB2 E3 ubiquitin ligase *(HUB) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g04109 HUB2 E3 ubiquitin ligase *(HUB) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01018223001 RDO4, HUB1 Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
GSVIVT01025404001 HUB2 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Len_g08188 HUB2 E3 ubiquitin ligase *(HUB) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g12516 HUB2 E3 ubiquitin ligase *(HUB) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g11288 HUB2 E3 ubiquitin ligase *(HUB) & original description: none 0.05 OrthoFinder output from all 47 species
MA_10433221g0010 RDO4, HUB1 RING-HC-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_10433679g0010 RDO4, HUB1 RING-HC-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_164157g0010 HUB2 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Mp6g03540.1 RDO4, HUB1 RING-HC-class E3 ligase 0.02 OrthoFinder output from all 47 species
Pir_g10428 RDO4, HUB1 E3 ubiquitin ligase *(HUB) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g01320 HUB2 E3 ubiquitin ligase *(HUB) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0171.g024398 HUB2 not classified & original description: CDS=249-827 0.02 OrthoFinder output from all 47 species
Sam_g12359 No alias E3 ubiquitin ligase *(HUB) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g35279 No alias E3 ubiquitin ligase *(HUB) & original description: none 0.03 OrthoFinder output from all 47 species
Smo175555 HUB2 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Spa_g08099 HUB2 E3 ubiquitin ligase *(HUB) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g15227 RDO4, HUB1 E3 ubiquiTin ligase *(HUB) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0004089 carbonate dehydratase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA

No InterPro domains available for this sequence

No external refs found!