Cpa|evm.model.tig00001623.10


Description : Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana


Gene families : OG_01_0000306 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000306_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001623.10
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00203740 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39620,... 0.02 Archaeplastida
AT3G06430 EMB2750 Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
AT3G53170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
AT4G39620 EMB2453, ATPPR5 Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
GSVIVT01032162001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.01 Archaeplastida
GSVIVT01038096001 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.01 Archaeplastida
Gb_14850 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
Gb_18854 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.01 Archaeplastida
Gb_40303 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.01 Archaeplastida
LOC_Os02g51480.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.01 Archaeplastida
LOC_Os03g02430.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.01 Archaeplastida
LOC_Os03g19650.3 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.01 Archaeplastida
LOC_Os06g07550.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.01 Archaeplastida
MA_10431478g0010 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.01 Archaeplastida
Smo119487 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.01 Archaeplastida
Solyc04g054270.4.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.01 Archaeplastida
Zm00001e023883_P001 No alias Pentatricopeptide repeat-containing protein PPR5,... 0.02 Archaeplastida
Zm00001e025825_P001 No alias no hits & (original description: none) 0.01 Archaeplastida
Zm00001e032726_P001 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR033443 PPR_long 302 429
IPR002885 Pentatricopeptide_repeat 265 295
IPR002885 Pentatricopeptide_repeat 445 463
IPR002885 Pentatricopeptide_repeat 192 239
IPR002885 Pentatricopeptide_repeat 465 517
No external refs found!