Dde_g50320


Description : scaffold component *(GANP/SAC3) of TREX-2 mRNP trafficking complex & original description: none


Gene families : OG0001595 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001595_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g50320

Target Alias Description ECC score Gene Family Method Actions
Aev_g14299 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.03 OrthoFinder output from all 47 species
Aop_g29510 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.03 OrthoFinder output from all 47 species
Cba_g37895 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.04 OrthoFinder output from all 47 species
Ceric.08G063500.1 Ceric.08G063500 scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.03 OrthoFinder output from all 47 species
Dcu_g05843 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.03 OrthoFinder output from all 47 species
Dcu_g37575 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g20956 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.03 OrthoFinder output from all 47 species
MA_10433102g0010 No alias scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.04 OrthoFinder output from all 47 species
Ppi_g01326 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.06 OrthoFinder output from all 47 species
Zm00001e035716_P003 Zm00001e035716 scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR005062 SAC3/GANP/THP3_conserved 269 562
No external refs found!