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<a href="/profile/export/species">Export expression levels</a></li> <li class="divider"></li> <li class="dropdown-header">Expression Specificity</li> <li><a href="/specificity_comparison/">Compare specificities</a></li> <li><a href="/search/specific/profiles">Find specific profiles</a></li> <li class="divider"></li> <li class="dropdown-header">Co-expression Networks</li> <li><a href="/custom_network/">Create custom network</a></li> <li><a href="/search/enriched/clusters">Find enriched clusters</a></li> </ul> </li> <li> <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-haspopup="true" aria-expanded="false">Search <span class="caret"></span></a> <ul class="dropdown-menu"> <li><a href="/search/advanced">Search <span class="text-muted">(advanced)</span></a></li> <li class="divider"></li> <li><a href="/blast/">BLAST</a></li> </ul> </li> </ul> <ul class="nav navbar-nav navbar-right"> <li> <form class="navbar-form" role="search" method="post" id="search-form" name="search-form" action="/search/"> <input id="csrf_token" name="csrf_token" type="hidden" value="ImMwZmI4MDI1Mzg4ODA5MTc1YjRmN2ExY2Q5MjFmNzA0YzM4NGQyNTEi.Gm6UUg.V8u7RzVW3JHUAk8C8Rh8Z6xd0WE"> <div class="form-group input-group"> <input class="form-control" id="terms" name="terms" placeholder="Search" required type="text" value> <div class="input-group-btn"><button type="submit" class="btn btn-primary" value="Search" data-toggle="modal" data-target="#loaderModal"><i class="fa fa-search"></i></button></div> </div> </form> </li> <li> <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-haspopup="true" aria-expanded="false">Help <span class="caret"></span></a> <ul class="dropdown-menu"> <li><a href="https://github.com/sepro/CoNekT/blob/master/docs/tutorials/overview.md">Tutorial <span class="text-muted"></span></a></li> <li><a href="/contact">Contact</a></li> </li> </ul> </li> <li class="dropdown"> </li> </ul> </div> </div> </div> <div class="container"> </div> <div class="container"> <div class="top-pad"> <div class="sidebar-sequence" id="sidebar"> <p>Jump to ...</p> <nav id="navbar-side"> <ul class="nav nav-pills nav-stacked" data-spy="affix"> <li><a href="#expression_profile">Profile</a></li> <li><a href="#coexpression_networks">Networks</a></li> <li><a href="#annotation">Annotation</a></li> <li><a href="#links">Links</a></li> </ul> </nav> </div> <ol class="breadcrumb"> <li><a href="/">Home</a></li> <li><a href="/species/">Species</a></li> <li><a href="/species/view/17"><em>Davallia denticulata</em></a></li> <li>Sequence</li> <li class="active"><strong>Dde_g50062</strong></li> </ol> <h1><strong>Dde_g50062</strong></h1> <br> <p><strong>Description : </strong> not classified & original description: none</p> <br> <div> <p><strong><abbr title="Click to show help" href="/help/gene_family" data-target="#helpModal">Gene families</abbr> : </strong><a href="/family/view/1239828">OG0010227</a> (OrthoFinder output from all 47 species) Phylogenetic Tree(s): <a href="/tree/view/651907">OG0010227_tree</a> </p> <p><strong>Sequence :</strong> <a href="/sequence/modal/coding/852340" data-target="#profileModal">coding</a> (<a href="/sequence/fasta/coding/852340">download</a>), <a href="/sequence/modal/protein/852340" data-target="#profileModal">protein</a> (<a href="/sequence/fasta/protein/852340">download</a>) </p> </div> <h3 class="banner-blue" id="expression_profile">Expression Profile</h3> <br> <span class="warning-message"><i class="fa fa-exclamation-triangle" aria-hidden="true"></i> <strong>Attention:</strong> This gene has <strong><abbr title="Click to show help" href="/help/lowabundance" data-target="#helpModal">low abundance</abbr></strong>.</span> <br><br> <div class="pull-right"> <a href="#" class="btn btn-default" id="enable_pan" data-toggle="tooltip" title="Toggle Pan"><i class="fa fa-arrows" aria-hidden="true"></i></a> <a href="#" class="btn btn-default" id="enable_zoom" data-toggle="tooltip" title="Toggle zoom"><i class="fa fa-search" aria-hidden="true"></i></a> </div> <div style="height:550px; max-height:550px; margin-top:30px"> <canvas id="expression-profile" class="center-block" height="550"/> </div> <br> <div class="pull-right"> <a href="/profile/download/plot/1032719" class="btn btn-primary" download="plot_1032719.txt">Download</a> </div> <p><strong>Note:</strong>Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available <a href="/profile/view/1032719">here</a>.</p> <br> <div> <h3 class="banner-blue" id="coexpression_networks">Co-expression Networks</h3> <div class="table-responsive"> <table class="table table-striped table-separated" id="coexpression_table"> <thead> <tr> <th data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th data-sort="string-ins"><span class="sort-icon"></span>Description</th> <th>Actions</th> </tr> </thead> <tbody> <tr> <td><abbr title="Click to show help" href="/help/neighborhood" data-target="#helpModal">Neighborhood</abbr></td> <td>HRR: <strong>Dde_g50062</strong></td> <td><a href="/network/download/neighbors/3725467" data-toggle="tooltip" data-placement="top" title="Download direct neighbors" download="neighbors_3725467.txt"><i class="fa fa-list"></i></span> <a href="/network/graph/3725467" data-toggle="tooltip" data-placement="top" title="View neighborhood as graph"><i class="fa fa-sitemap"></i></a> <span class="text-muted" data-toggle="tooltip" data-placement="top" title="Disabled for neighborhoods"><i class="fa fa-area-chart"></i></span> <span class="text-muted" data-toggle="tooltip" data-placement="top" title="Disabled for neighborhoods"><i class="fa fa-table"></i></span></td> </tr> </tbody> </table> </div> </div> <br> <br> <h3 class="banner-blue" id="annotation">Functional Annotation</h3> <div class="panel with-nav-tabs panel-default"> <div class="panel-heading"> <ul class="nav nav-tabs"> <li class="active"><a href="#tab1default" data-toggle="tab">GO</a></li> <li><a href="#tab2default" data-toggle="tab">Predicted GO</a></li> <li><a href="#tab3default" data-toggle="tab">InterPro</a></li> </ul> </div> <div> <div class="tab-content"> <div class="tab-pane fade in active" id="tab1default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="go_table"> <thead> <tr> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/go" data-target="#helpModal">GO</abbr> Term</th> <th class="col-xs-6" data-sort="string-ins"><span class="sort-icon"></span>Name</th> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Evidence</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span>Source</th> </tr> </thead> <tbody> <tr> <td class="col-xs-12"><p>No GO annotation available for this sequence</p></td> </tr> </tbody> </table> </div> <div class="panel-body"> <a href="#" id="go_toggle">Toggle parental</a> </div> </div> <div class="tab-pane fade" id="tab2default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="predicted_go_table"> <thead> <tr> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/go" data-target="#helpModal">GO</abbr> Term</th> <th class="col-xs-6" data-sort="string-ins"><span class="sort-icon"></span>Name</th> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Evidence</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span>Source</th> </tr> </thead> <tbody> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/10468" data-toggle="tooltip" data-placement="top" title=""Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor)." [GOC:jl, ISBN:0198506732]">GO:0016746</a></td> <td class="col-xs-6">acyltransferase activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/10469" data-toggle="tooltip" data-placement="top" title=""Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor)." [GOC:jl]">GO:0016747</a></td> <td class="col-xs-6">acyltransferase activity, transferring groups other than amino-acyl groups</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/14465" data-toggle="tooltip" data-placement="top" title=""The covalent alteration of one or more amino acid residues within a peptide, resulting in a change in the properties of that peptide." [GOC:mah]">GO:0031179</a></td> <td class="col-xs-6">peptide modification</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> </tbody> </table> </div> </div> <div class="tab-pane fade" id="tab3default"> <div class="panel-body"> <p>No InterPro domains available for this sequence</p> </div> </div> </div> </div> </div> <div class="row"> <div class="col-lg-12 col-md-12 col-sm-12"> <div class="panel panel-default"> <div class="panel-heading" id="links">External Links</div> <div class="table-responsive"> <table class="table table-striped table-separated"> <tbody> <tr> <td><em>No external refs found!</em></td> </td> </tr> </tbody> </table> </div> </div> </div> </div> <div class="modal" id="profileModal" tabindex="-1" role="dialog" aria-labelledby="profileModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> </div> </div> </div> <footer class="footer" id="footer"> <div class="container"> <div class="row"> <div class="col-xs-2"><strong class="text-muted"><a href="/features" class="text-muted">CoNekT</a></strong></div> <div class="col-xs-2"><a href="/about" class="text-muted">About</a></div> <div class="col-xs-2"><a href="/contact" class="text-muted">Contact</a></div> <div class="col-xs-2"><a href="/disclaimer" class="text-muted">Disclaimer</a></div> <div class="col-xs-2"><a href="/privacy" class="text-muted">Privacy policy</a></div> </div> </div> </footer> <div class="modal" id="helpModal" tabindex="-1" role="dialog" aria-labelledby="helpModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> <div class="modal" id="loaderModal" tabindex="-1" role="dialog" aria-labelledby="loaderModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> <div class="modal-body"> <div id="leafy_loader"></div> <p class="text-center text-muted" id="leafy_loader_text">Loading ... please wait ... </p> <p class="text-center" id="leafy_loader_close_btn" style="display:none"><button type="button" class="btn btn-primary" data-dismiss="modal" style>Close</button></p> </div> </div> </div> </div> <script src="/static/js/jquery.min.js"></script> <script src="/static/js/bootstrap.min.js"></script> <script src="/static/js/stupidtable.min.js"></script> <script src="/static/js/TweenMax.min.js"></script> <script src="/static/js/jquery.qtip.min.js"></script> <script src="/static/js/planet_loader.js"></script> <script> function init_qtip() { $('.qtip_tooltip').each(function() { $(this).qtip({ content: { text: function(event, api) { $.ajax({ url: api.elements.target.attr('qtip_href') }) .then(function(content) { // Set the tooltip content upon successful retrieval api.set('content.text', content); 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