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  5. Dde_g48893

Dde_g48893 (EMB2758)


Aliases : EMB2758

Description : not classified & original description: none


Gene families : OG0014971 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0014971_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g48893

Target Alias Description ECC score Gene Family Method Actions
Aop_g67504 EMB2758 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.04G040100.1 Ceric.04G040100 not classified & original description: pacid=50631977... 0.03 OrthoFinder output from all 47 species
Len_g17567 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g38057 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g55114 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 19 40
IPR002885 Pentatricopeptide_repeat 293 318
IPR002885 Pentatricopeptide_repeat 398 420
IPR002885 Pentatricopeptide_repeat 92 114
IPR002885 Pentatricopeptide_repeat 120 150
IPR002885 Pentatricopeptide_repeat 525 572
IPR002885 Pentatricopeptide_repeat 422 473
IPR002885 Pentatricopeptide_repeat 321 367
IPR002885 Pentatricopeptide_repeat 219 266
No external refs found!