Dde_g47336 (GRF5, AtGRF5)

Aliases : GRF5, AtGRF5

Description : component *(GRF) of GRF-GIF transcriptional complex & original description: none

Gene families : OG0000528 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000528_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dde_g47336
Cluster	HCCA: Cluster_28

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00257830	GRF2, AtGRF2,...	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.02	OrthoFinder output from all 47 species
AMTR_s00040p00189460	GRF4, AtGRF4,...	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.03	OrthoFinder output from all 47 species
AMTR_s00065p00092420	GRF1, AtGRF1,...	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.03	OrthoFinder output from all 47 species
Cba_g09120	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Dcu_g16923	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Ppi_g63627	GRF1, AtGRF1	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Tin_g32090	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e030774_P001	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009733	response to auxin	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR014977	WRC_dom	278	318
IPR014978	Gln-Leu-Gln_QLQ	213	247

External Links

No external refs found!

Dde_g47336 (GRF5, AtGRF5)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation