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  5. Lfl_g19818

Lfl_g19818


Description : not classified & original description: none


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g19818

Target Alias Description ECC score Gene Family Method Actions
Dcu_g05540 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.06 OrthoFinder output from all 47 species
Dde_g05277 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.06 OrthoFinder output from all 47 species
GSVIVT01008897001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
LOC_Os06g42700.1 LOC_Os06g42700 E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g25463 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g23014 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g01601 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g12284 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Spa_g39230 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g12871 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e012628_P001 Zm00001e012628 E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.03 OrthoFinder output from all 47 species
Zm00001e024003_P001 Zm00001e024003 E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 24 66
No external refs found!