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  5. Dde_g39747

Dde_g39747 (PUB26)


Aliases : PUB26

Description : U-Box-group-III E3 ubiquitin ligase & original description: none


Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g39747
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00130440 CMPG2, ATCMPG2,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AT3G19380 PUB25 plant U-box 25 0.03 OrthoFinder output from all 47 species
AT3G52450 PUB22 plant U-box 22 0.02 OrthoFinder output from all 47 species
AT5G64660 CMPG2, ATCMPG2 CYS, MET, PRO, and GLY protein 2 0.03 OrthoFinder output from all 47 species
Aev_g02974 PUB23 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g01642 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12417 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g34288 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene33499.t1 PUB25, Aspi01Gene33499 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene44314.t1 PUB23, Aspi01Gene44314 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44315.t1 PUB23, Aspi01Gene44315 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44316.t1 PUB23, Aspi01Gene44316 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44317.t1 PUB23, Aspi01Gene44317 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44318.t1 PUB23, Aspi01Gene44318 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44320.t1 PUB23, Aspi01Gene44320 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44321.t1 PUB23, Aspi01Gene44321 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44322.t1 Aspi01Gene44322 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene51615.t1 PUB15, Aspi01Gene51615 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene56365.t1 PUB25, Aspi01Gene56365 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Cre17.g705450 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g46168 PUB23 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g10795 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g03660 PUB23 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_16228 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os01g57735.1 LOC_Os01g57735 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os01g64570.1 PUB23, LOC_Os01g64570 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os02g33680.1 CMPG2, ATCMPG2,... U-box domain-containing protein 29 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os02g50460.1 LOC_Os02g50460 U-box domain-containing protein 20 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os06g13870.1 LOC_Os06g13870 U-box domain-containing protein 21 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os12g06410.1 PUB24, LOC_Os12g06410 E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_6335g0010 CMPG2, ATCMPG2 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Mp3g11730.1 PUB25 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Mp7g11020.1 PUB25 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Nbi_g09512 PUB29, ATPUB29 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g15868 PUB23 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g36530 PUB23 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0085.g018296 PUB8, B80 not classified & original description: CDS=1-1353 0.03 OrthoFinder output from all 47 species
Solyc01g005160.4.1 Solyc01g005160 U-box domain-containing protein 21 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc01g007000.4.1 PUB22, Solyc01g007000 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc01g007020.4.1 PUB23, Solyc01g007020 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc01g007030.3.1 PUB22, Solyc01g007030 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc11g068920.1.1 PUB23, Solyc11g068920 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Spa_g47017 PUB23 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e015491_P001 PUB23, Zm00001e015491 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e022679_P001 CMPG2, ATCMPG2,... U-box domain-containing protein 29 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e041397_P001 PUB23, Zm00001e041397 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 114 185
No external refs found!