AMTR_s00025p00181800 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00025.219

Description : Pumilio homolog 5 OS=Arabidopsis thaliana


Gene families : OG_01_0000536 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000536_tree ,
OG_02_0000342 (LandPlants) Phylogenetic Tree(s): OG_02_0000342_tree ,
OG_03_0004029 (SeedPlants) Phylogenetic Tree(s): OG_03_0004029_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00025p00181800
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
AT3G20250 PUM5, APUM5 pumilio 5 0.06 Archaeplastida
GSVIVT01016507001 No alias Pumilio homolog 1 OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_23280 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_30039 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Gb_39566 No alias Pumilio homolog 5 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os01g62650.1 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os02g57390.1 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.05 Archaeplastida
LOC_Os09g32210.1 No alias Pumilio homolog 5 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Pp3c3_36740V3.1 No alias pumilio 1 0.04 Archaeplastida
Pp3c3_36960V3.1 No alias pumilio 1 0.03 Archaeplastida
Pp3c8_2770V3.1 No alias pumilio 1 0.02 Archaeplastida
Solyc04g011580.4.1 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e016242_P002 No alias Pumilio homolog 4 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e023593_P002 No alias no hits & (original description: none) 0.03 Archaeplastida
AT3G20250 PUM5, APUM5 pumilio 5 0.04 LandPlants
GSVIVT01016507001 No alias Pumilio homolog 1 OS=Arabidopsis thaliana 0.02 LandPlants
GSVIVT01024918001 No alias Pumilio homolog 1 OS=Arabidopsis thaliana 0.01 LandPlants
GSVIVT01029553001 No alias Pumilio homolog 5 OS=Arabidopsis thaliana 0.02 LandPlants
Gb_23280 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 LandPlants
Gb_30039 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 LandPlants
Gb_39566 No alias Pumilio homolog 5 OS=Arabidopsis thaliana... 0.02 LandPlants
LOC_Os02g57390.1 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.04 LandPlants
LOC_Os09g32210.1 No alias Pumilio homolog 5 OS=Arabidopsis thaliana... 0.02 LandPlants
Pp3c3_36740V3.1 No alias pumilio 1 0.03 LandPlants
Smo86145 No alias Pumilio homolog 1 OS=Arabidopsis thaliana 0.02 LandPlants
Solyc04g011580.4.1 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 LandPlants
Zm00001e016242_P002 No alias Pumilio homolog 4 OS=Arabidopsis thaliana... 0.03 LandPlants
Zm00001e023593_P002 No alias no hits & (original description: none) 0.03 LandPlants
AT3G20250 PUM5, APUM5 pumilio 5 0.03 SeedPlants
GSVIVT01029553001 No alias Pumilio homolog 5 OS=Arabidopsis thaliana 0.01 SeedPlants
Gb_23280 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 SeedPlants
Gb_39566 No alias Pumilio homolog 5 OS=Arabidopsis thaliana... 0.02 SeedPlants
LOC_Os09g32210.1 No alias Pumilio homolog 5 OS=Arabidopsis thaliana... 0.02 SeedPlants
Solyc03g123980.4.1 No alias Pumilio homolog 5 OS=Arabidopsis thaliana... 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR012940 NABP 313 668
IPR001313 Pumilio_RNA-bd_rpt 782 815
IPR001313 Pumilio_RNA-bd_rpt 746 778
IPR001313 Pumilio_RNA-bd_rpt 854 888
IPR001313 Pumilio_RNA-bd_rpt 710 741
IPR001313 Pumilio_RNA-bd_rpt 891 921
IPR001313 Pumilio_RNA-bd_rpt 936 965
IPR001313 Pumilio_RNA-bd_rpt 818 850
IPR001313 Pumilio_RNA-bd_rpt 673 707
No external refs found!