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  5. AMTR_s00025p00175980

AMTR_s00025p00175980 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00025.211

Description : Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana


Gene families : OG_01_0000306 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000306_tree ,
OG_02_0001965 (LandPlants) Phylogenetic Tree(s): OG_02_0001965_tree ,
OG_03_0003421 (SeedPlants) Phylogenetic Tree(s): OG_03_0003421_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00025p00175980
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AT3G53170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
GSVIVT01038096001 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.04 Archaeplastida
LOC_Os07g36450.1 No alias THA8 plastidial RNA splicing factor 0.03 Archaeplastida
Smo119487 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.02 Archaeplastida
Smo135826 No alias Pentatricopeptide repeat-containing protein At4g39620,... 0.03 Archaeplastida
Smo416782 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.03 Archaeplastida
Zm00001e023883_P001 No alias Pentatricopeptide repeat-containing protein PPR5,... 0.02 Archaeplastida
Zm00001e032726_P001 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.02 Archaeplastida
AT3G53170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 LandPlants
GSVIVT01032162001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.02 LandPlants
LOC_Os03g19650.3 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.02 LandPlants
AT3G53170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 SeedPlants
GSVIVT01032162001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.02 SeedPlants
LOC_Os03g02430.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 135 162
IPR002885 Pentatricopeptide_repeat 308 334
IPR002885 Pentatricopeptide_repeat 341 386
IPR002885 Pentatricopeptide_repeat 233 281
IPR002885 Pentatricopeptide_repeat 166 210
IPR002885 Pentatricopeptide_repeat 410 457
No external refs found!