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  3. Lygodium flexuosum
  4. Sequence
  5. Lfl_g19286

Lfl_g19286


Description : large subunit of U2AF pre-RNA splicing auxiliary factor complex & original description: none


Gene families : OG0000716 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000716_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g19286
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
Adi_g117015 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Aev_g23751 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Ala_g02552 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.06 OrthoFinder output from all 47 species
Ala_g12630 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Als_g02503 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Als_g07361 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.04 OrthoFinder output from all 47 species
Als_g10024 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Als_g38682 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.06 OrthoFinder output from all 47 species
Aop_g11505 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Cba_g12276 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.04 OrthoFinder output from all 47 species
Cba_g21572 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.05 OrthoFinder output from all 47 species
Cba_g38521 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Ceric.02G010500.1 ATU2AF65A,... large subunit of U2AF pre-RNA splicing auxiliary factor... 0.07 OrthoFinder output from all 47 species
Ceric.30G061500.1 Ceric.30G061500 large subunit of U2AF pre-RNA splicing auxiliary factor... 0.04 OrthoFinder output from all 47 species
Dac_g14505 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Dcu_g05606 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.06 OrthoFinder output from all 47 species
Dcu_g07575 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.04 OrthoFinder output from all 47 species
Dcu_g13843 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Dcu_g48783 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
GSVIVT01018993001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
LOC_Os11g45590.1 ATU2AF65A, LOC_Os11g45590 large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 OrthoFinder output from all 47 species
Len_g18282 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
MA_10429502g0010 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 OrthoFinder output from all 47 species
MA_9595064g0010 No alias Splicing factor U2af large subunit B OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_96898g0010
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  3. Angiopteris evecta
  4. Sequence
  5. Aev_g14710

Aev_g14710


Description : EC_2.7 transferase transferring phosphorus-containing group & original description: none

 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 OrthoFinder output from all 47 species
Mp6g18430.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 OrthoFinder output from all 47 species
Mp6g18910.1 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 OrthoFinder output from all 47 species
Msp_g36437 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Nbi_g35208 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Pir_g16504 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Pir_g61224 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Pnu_g25870 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Pnu_g32452 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Pnu_g32453 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Ppi_g06430 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.06 OrthoFinder output from all 47 species
Ppi_g63646 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.05 OrthoFinder output from all 47 species
Sam_g09275 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Smo160385 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
Solyc02g062920.3.1 ATU2AF65A, Solyc02g062920 large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 OrthoFinder output from all 47 species
Solyc02g085570.4.1 ATU2AF65A, Solyc02g085570 large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.04 OrthoFinder output from all 47 species
Solyc12g008750.3.1 Solyc12g008750 large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 OrthoFinder output from all 47 species
Spa_g04427 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.04 OrthoFinder output from all 47 species
Spa_g15594 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Spa_g18763 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Spa_g26890 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.06 OrthoFinder output from all 47 species
Tin_g03341 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Tin_g05158 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.05 OrthoFinder output from all 47 species
Tin_g15579 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Tin_g21668 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Zm00001e021000_P006 Zm00001e021000 large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0004609 phosphatidylserine decarboxylase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 519 579
IPR000504 RRM_dom 354 423
No external refs found!