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  5. MA_11074g0010

MA_11074g0010


Description : 35.1.5 not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein Encodes a chloroplast RNA editing factor. ORGANELLE TRANSCRIPT PROCESSING 84 (OTP84)


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): MA_11074g0010
Cluster HCCA cluster: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
AT1G06140 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Gene family
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.03 Gene family
AT1G18485 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Gene family
AT1G20230 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Gene family
AT2G27610 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT3G26782 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Gene family
AT3G57430 OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT4G39530 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Gene family
AT4G39952 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Gene family
AT5G66520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Gene family
GSVIVT01003256001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
GSVIVT01007645001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01010031001 No alias No description available 0.03 Gene family
GSVIVT01015233001 No alias No description available 0.03 Gene family
GSVIVT01018597001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
GSVIVT01020758001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
GSVIVT01021756001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01022230001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01024912001 No alias No description available 0.03 Gene family
GSVIVT01025639001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
GSVIVT01026025001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
GSVIVT01026881001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01028819001 No alias No description available 0.02 Gene family
GSVIVT01032721001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
GSVIVT01033304001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01033389001 No alias No description available 0.02 Gene family
GSVIVT01036169001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01036511001 No alias No description available 0.02 Gene family
GSVIVT01037562001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os01g25270 Os01g0355100 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os01g62910 Os01g0848300 No description available 0.02 Gene family
LOC_Os01g72930 Os01g0959600 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os03g16450 Os03g0271300 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os05g30710 Os05g0370000 No description available 0.02 Gene family
LOC_Os05g50950 Os05g0586900 No description available 0.02 Gene family
LOC_Os10g34720 Os10g0488900 No description available 0.03 Gene family
LOC_Os12g06650 Os12g0163600 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_10429540g0020 No alias No description available 0.02 Gene family
MA_10429837g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_20782g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_33151g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_39263g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_83898g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_96662g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Smo130453 PACid_15421804 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Smo47998 PACid_15423210 No description available 0.02 Gene family
Smo84768 PACid_15419386 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Smo98955 PACid_15417483 No description available 0.02 Gene family
Solyc01g080190.3.1 Solyc01g080190.3 No description available 0.02 Gene family
Solyc02g079380.2.1 Solyc02g079380.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc02g093380.1.1 Solyc02g093380.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc03g007840.1.1 Solyc03g007840.1 35.1.27 not assigned.no ontology.tetratricopeptide... 0.03 Gene family
Solyc03g082830.2.1 Solyc03g082830.2 No description available 0.03 Gene family
Solyc03g114010.2.1 Solyc03g114010.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc03g116000.1.1 Solyc03g116000.1 No description available 0.03 Gene family
Solyc07g055310.1.1 Solyc07g055310.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc11g010220.2.1 Solyc11g010220.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc11g071370.1.1 Solyc11g071370.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d016473 GRMZM2G328961 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d020825 GRMZM5G851929 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d023525 GRMZM2G001466 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d025656 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d027555 GRMZM2G176523 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Zm00001d028388 No alias 35.1.27 not assigned.no ontology.tetratricopeptide... 0.02 Gene family
Zm00001d028422 GRMZM2G019689 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d031535 GRMZM2G076257 No description available 0.03 Gene family
Zm00001d032185 GRMZM2G161368 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d035922 GRMZM2G102938,... 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d039193 GRMZM2G440349 No description available 0.02 Gene family
Zm00001d039449 No alias No description available 0.02 Gene family
Zm00001d039873 GRMZM2G380195 No description available 0.03 Gene family
Zm00001d042039 GRMZM2G060536 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d043081 GRMZM2G350410 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d052794 GRMZM2G140600 No description available 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 448 572
IPR002885 Pentatricopeptide_repeat 419 444
IPR002885 Pentatricopeptide_repeat 281 308
IPR002885 Pentatricopeptide_repeat 352 373
IPR002885 Pentatricopeptide_repeat 207 254
IPR002885 Pentatricopeptide_repeat 7 50
IPR002885 Pentatricopeptide_repeat 106 152
No external refs found!