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  5. Lfl_g19229

Lfl_g19229 (EIN5, AIN1, XRN4, ATXRN4)


Aliases : EIN5, AIN1, XRN4, ATXRN4

Description : exoribonuclease *(XRN4) & original description: none


Gene families : OG0000769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000769_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g19229

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00024460 XRN3, AtXRN3,... 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00491p00000370 XRN3, AtXRN3,... 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT1G54490 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease 4 0.08 OrthoFinder output from all 47 species
AT1G75660 XRN3, AtXRN3 5'-3' exoribonuclease 3 0.03 OrthoFinder output from all 47 species
Adi_g078672 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g11412 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g17886 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g02515 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g15103 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.08 OrthoFinder output from all 47 species
Als_g07461 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21055 XRN3, AtXRN3 exoribonuclease *(XRN4) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26061 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06747 XRN3, AtXRN3 exoribonuclease *(XRN4) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene15159.t1 XRN3, AtXRN3,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene51564.t1 EIN5, AIN1,... exoribonuclease *(XRN4) & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene67539.t1 XRN3, AtXRN3,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0149.g053258 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: CDS=205-3336 0.05 OrthoFinder output from all 47 species
Azfi_s0236.g059553 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: CDS=1782-4652 0.05 OrthoFinder output from all 47 species
Cba_g15355 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g24148 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.08G059400.1 EIN5, AIN1,... exoribonuclease *(XRN4) & original description:... 0.11 OrthoFinder output from all 47 species
Ceric.30G049400.1 XRN3, AtXRN3,... exoribonuclease *(RAT1/XRN2) & original description:... 0.08 OrthoFinder output from all 47 species
Cre16.g679900 XRN3, AtXRN3 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dac_g42552 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07777 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g45506 XRN3, AtXRN3 exoribonuclease *(XRN4) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g05069 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g06196 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01009879001 XRN3, AtXRN3 RNA biosynthesis.RNA polymerase II-dependent... 0.07 OrthoFinder output from all 47 species
Gb_03499 XRN3, AtXRN3 5-3 exoribonuclease 3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os03g58060.1 EIN5, AIN1,... EBF-modulating exoribonuclease (EIN5/XRN4).... 0.05 OrthoFinder output from all 47 species
MA_10430844g0010 XRN3, AtXRN3 exoribonuclease (RAT1/XRN2) 0.04 OrthoFinder output from all 47 species
Mp3g08820.1 XRN3, AtXRN3 exoribonuclease (RAT1/XRN2) 0.05 OrthoFinder output from all 47 species
Msp_g13176 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g14685 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19708 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01687 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03252 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012142 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: CDS=244-3387 0.03 OrthoFinder output from all 47 species
Sam_g12064 No alias exoribonuclease *(RAT1/XRN2) & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g38845 No alias exoribonuclease *(XRN4) & original description: none 0.1 OrthoFinder output from all 47 species
Solyc04g081280.3.1 XRN3, AtXRN3,... exoribonuclease (RAT1/XRN2) 0.04 OrthoFinder output from all 47 species
Solyc12g089280.2.1 XRN3, AtXRN3,... exoribonuclease (RAT1/XRN2) 0.03 OrthoFinder output from all 47 species
Tin_g46210 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e011879_P001 EIN5, AIN1,... EBF-modulating exoribonuclease (EIN5/XRN4).... 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR004859 Xrn1_N 1 253
IPR041412 Xrn1_helical 328 427
IPR041412 Xrn1_helical 436 729
IPR001878 Znf_CCHC 263 277
No external refs found!