Dde_g31803

Description : component *(NOT2) of mRNA deadenylation CCR4-NOT complex & original description: none

Gene families : OG0002132 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002132_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dde_g31803
Cluster	HCCA: Cluster_190

Target	Alias	Description	ECC score	Gene Family Method
AT5G59710	VIP2, AtVIP2	VIRE2 interacting protein 2	0.02	OrthoFinder output from all 47 species
Azfi_s0424.g069220	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.03	OrthoFinder output from all 47 species
Len_g13705	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.03	OrthoFinder output from all 47 species
Smo430429	VIP2, AtVIP2	RNA processing.RNA decay.deadenylation-dependent...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004565	beta-galactosidase activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
MF	GO:0008061	chitin binding	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
CC	GO:0009341	beta-galactosidase complex	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
MF	GO:0015925	galactosidase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA
MF	GO:0043531	ADP binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007282	NOT2/3/5_C	557	674

External Links

No external refs found!