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  5. Dde_g31250

Dde_g31250


Description : RNA helicase component *(SKI2) of SUPERKILLER regulation complex & original description: none


Gene families : OG0000709 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000709_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g31250

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00200390 HEN2,... RNA processing.RNA decay.exosome complex.associated... 0.02 OrthoFinder output from all 47 species
AMTR_s00029p00206820 evm_27.TU.AmTr_v1... RNA processing.RNA decay.exosome complex.associated... 0.03 OrthoFinder output from all 47 species
AMTR_s00066p00125980 evm_27.TU.AmTr_v1... RNA processing.RNA decay.exosome complex.associated... 0.02 OrthoFinder output from all 47 species
AT1G59760 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.03 OrthoFinder output from all 47 species
AT2G06990 HEN2 RNA helicase, ATP-dependent, SK12/DOB1 protein 0.05 OrthoFinder output from all 47 species
AT3G46960 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.04 OrthoFinder output from all 47 species
Aob_g12480 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.02 OrthoFinder output from all 47 species
Aop_g09338 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.05 OrthoFinder output from all 47 species
Aspi01Gene40704.t1 Aspi01Gene40704 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g01348 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Ceric.08G061100.1 HEN2, Ceric.08G061100 RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.04 OrthoFinder output from all 47 species
Ceric.15G051600.1 Ceric.15G051600 RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Ceric.17G002800.1 Ceric.17G002800 RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 OrthoFinder output from all 47 species
Cre06.g289950 HEN2 RNA processing.RNA decay.exosome complex.associated... 0.02 OrthoFinder output from all 47 species
Cre11.g482483 No alias RNA processing.RNA decay.exosome complex.associated... 0.01 OrthoFinder output from all 47 species
Dac_g23858 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 OrthoFinder output from all 47 species
Dcu_g18967 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Ehy_g14599 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.05 OrthoFinder output from all 47 species
GSVIVT01024809001 No alias RNA processing.RNA decay.exosome complex.associated... 0.04 OrthoFinder output from all 47 species
GSVIVT01032255001 HEN2 RNA processing.RNA decay.exosome complex.associated... 0.04 OrthoFinder output from all 47 species
LOC_Os02g06500.1 LOC_Os02g06500 RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.04 OrthoFinder output from all 47 species
LOC_Os11g07500.1 HEN2, LOC_Os11g07500 RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 OrthoFinder output from all 47 species
Len_g22463 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 OrthoFinder output from all 47 species
Len_g58854 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.05 OrthoFinder output from all 47 species
MA_10426385g0010 HEN2 DExH-box ATP-dependent RNA helicase DExH10... 0.02 OrthoFinder output from all 47 species
MA_10437134g0010 No alias DExH-box ATP-dependent RNA helicase DExH11... 0.03 OrthoFinder output from all 47 species
MA_167255g0020 HEN2 DExH-box ATP-dependent RNA helicase DExH10... 0.02 OrthoFinder output from all 47 species
Mp1g05510.1 No alias RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.03 OrthoFinder output from all 47 species
Mp6g05580.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 OrthoFinder output from all 47 species
Ore_g17493 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Ore_g41022 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.02 OrthoFinder output from all 47 species
Pnu_g03894 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 OrthoFinder output from all 47 species
Pnu_g07586 HEN2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g12955 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0205.g025703 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Sam_g14012 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Smo79650 HEN2 RNA processing.RNA decay.exosome complex.associated... 0.02 OrthoFinder output from all 47 species
Solyc05g047520.4.1 HEN2, Solyc05g047520 RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 OrthoFinder output from all 47 species
Solyc06g005990.4.1 Solyc06g005990 DExH-box ATP-dependent RNA helicase DExH11... 0.04 OrthoFinder output from all 47 species
Solyc12g017860.3.1 HEN2, Solyc12g017860 RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.04 OrthoFinder output from all 47 species
Zm00001e013693_P002 Zm00001e013693 RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.06 OrthoFinder output from all 47 species
Zm00001e036710_P004 Zm00001e036710 RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0046903 secretion IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 365 511
IPR025696 rRNA_proc-arch_dom 841 1146
IPR012961 Ski2/MTR4_C 1173 1342
IPR040801 Ski2_N 137 226
No external refs found!