Cpa|evm.model.tig00001049.16


Description : RNA processing.RNA modification.rRNA/tRNA methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.Nop1/fibrillarin methyltransferase component


Gene families : OG_01_0003455 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003455_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001049.16
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00218020 evm_27.TU.AmTr_v1... RNA processing.RNA modification.rRNA/tRNA... 0.03 Archaeplastida
AT4G25630 FIB2, ATFIB2 fibrillarin 2 0.04 Archaeplastida
AT5G52470 FIB1, ATFIB1,... fibrillarin 1 0.05 Archaeplastida
Cre02.g077300 No alias RNA processing.RNA modification.rRNA/tRNA... 0.08 Archaeplastida
GSVIVT01028887001 No alias RNA processing.RNA modification.rRNA/tRNA... 0.05 Archaeplastida
Gb_33899 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.03 Archaeplastida
LOC_Os05g08360.1 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.02 Archaeplastida
MA_124463g0010 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.03 Archaeplastida
Mp2g12880.1 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.1 Archaeplastida
Pp3c16_12410V3.1 No alias fibrillarin 2 0.03 Archaeplastida
Pp3c27_4160V3.1 No alias fibrillarin 2 0.02 Archaeplastida
Pp3c5_11200V3.1 No alias fibrillarin 2 0.04 Archaeplastida
Pp3c6_12420V3.1 No alias fibrillarin 2 0.07 Archaeplastida
Smo171051 No alias RNA processing.RNA modification.rRNA/tRNA... 0.01 Archaeplastida
Solyc03g025270.3.1 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.05 Archaeplastida
Zm00001e023572_P001 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000692 Fibrillarin 66 262
No external refs found!