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  5. Dde_g29898

Dde_g29898 (NGA3)


Aliases : NGA3

Description : RAV/NGATHA-type transcription factor & original description: none


Gene families : OG0000941 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000941_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g29898
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AT3G11580 No alias AP2/B3-like transcriptional factor family protein 0.02 OrthoFinder output from all 47 species
Azfi_s0068.g036380 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.04 OrthoFinder output from all 47 species
Ceric.22G022700.1 TEM1, EDF1,... AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01027463001 NGA1 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
LOC_Os01g49830.1 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 OrthoFinder output from all 47 species
LOC_Os10g39190.1 NGA1, LOC_Os10g39190 transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species
LOC_Os11g05740.1 LOC_Os11g05740 transcription factor (RAV/NGATHA) 0.02 OrthoFinder output from all 47 species
Len_g14264 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g21540 NGA1 RAV/NGATHA-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_10436315g0010 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 OrthoFinder output from all 47 species
MA_140243g0010 TEM1, EDF1 transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.01 OrthoFinder output from all 47 species
MA_18923g0010 EDF4, RAV1 transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 OrthoFinder output from all 47 species
Nbi_g11598 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Ore_g44549 TEM1, EDF1 AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e024165_P001 Zm00001e024165 transcription factor (RAV/NGATHA) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003855 3-dehydroquinate dehydratase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 2 49
No external refs found!