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  5. Lfl_g18488

Lfl_g18488 (PAT1)


Aliases : PAT1

Description : GRAS-type transcription factor & original description: none


Gene families : OG0000550 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000550_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g18488
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00186p00018500 SCL1,... RNA biosynthesis.transcriptional activation.GRAS... 0.03 OrthoFinder output from all 47 species
AT1G50600 SCL5 scarecrow-like 5 0.03 OrthoFinder output from all 47 species
AT4G17230 SCL13 SCARECROW-like 13 0.05 OrthoFinder output from all 47 species
Adi_g085312 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g04153 PAT1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g37460 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02325 PAT1 GRAS-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g08305 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g12229 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g14420 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g10196 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g17653 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g21753 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g50028 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01362 PAT1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g26689 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene13768.t1 PAT1, Aspi01Gene13768 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene48189.t1 PAT1, Aspi01Gene48189 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene64634.t1 PAT1, Aspi01Gene64634 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0084.g039020 PAT1 GRAS-type transcription factor & original description: CDS=1-2502 0.03 OrthoFinder output from all 47 species
Dac_g00898 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g22968 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g03424 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g03441 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g19426 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02729 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16560 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01007007001 SCL21 RNA biosynthesis.transcriptional activation.GRAS... 0.06 OrthoFinder output from all 47 species
GSVIVT01010007001 SCL1 RNA biosynthesis.transcriptional activation.GRAS... 0.05 OrthoFinder output from all 47 species
GSVIVT01014570001 PAT1 RNA biosynthesis.transcriptional activation.GRAS... 0.05 OrthoFinder output from all 47 species
GSVIVT01037777001 PAT1 RNA biosynthesis.transcriptional activation.GRAS... 0.05 OrthoFinder output from all 47 species
Gb_40278 SCL5 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
LOC_Os07g36170.2 PAT1, LOC_Os07g36170 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
LOC_Os07g39470.1 PAT1, LOC_Os07g39470 transcription factor (GRAS) 0.05 OrthoFinder output from all 47 species
Len_g12269 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Len_g20939 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g03280 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g06138 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g10420 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g27471 PAT1 GRAS-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g10124 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g19162 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g16498 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g10322 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g16566 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007649 SCL5 GRAS-type transcription factor & original description: CDS=1-2229 0.03 OrthoFinder output from all 47 species
Smo77165 PAT1 RNA biosynthesis.transcriptional activation.GRAS... 0.02 OrthoFinder output from all 47 species
Solyc06g035620.3.1 PAT1, Solyc06g035620 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Solyc12g005340.3.1 PAT1, Solyc12g005340 transcription factor (GRAS) 0.04 OrthoFinder output from all 47 species
Spa_g07387 PAT1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g14334 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g15312 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23112 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g46955 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g14260 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g28749 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e010646_P001 PAT1, Zm00001e010646 transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species
Zm00001e035384_P001 PAT1, Zm00001e035384 transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004014 adenosylmethionine decarboxylase activity IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006576 biogenic amine metabolic process IEP HCCA
BP GO:0006595 polyamine metabolic process IEP HCCA
BP GO:0006596 polyamine biosynthetic process IEP HCCA
BP GO:0006597 spermine biosynthetic process IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008215 spermine metabolic process IEP HCCA
BP GO:0008216 spermidine metabolic process IEP HCCA
BP GO:0008295 spermidine biosynthetic process IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009309 amine biosynthetic process IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0042401 biogenic amine biosynthetic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 350 721
No external refs found!