Dde_g27008 (EDF3)

Aliases : EDF3

Description : AP2-RAV-type transcription factor *(EDF) & original description: none

Gene families : OG0000941 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000941_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dde_g27008

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00238950	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	OrthoFinder output from all 47 species
AMTR_s00018p00040300	NGA1,...	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
Ehy_g16987	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.04	OrthoFinder output from all 47 species
LOC_Os01g04800.1	EDF2, AtRAV2,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.03	OrthoFinder output from all 47 species
MA_10432625g0010	EDF3	transcription factor (AP2-RAV)	0.02	OrthoFinder output from all 47 species
MA_3503583g0010	NGA1	transcription factor (RAV/NGATHA)	0.02	OrthoFinder output from all 47 species
MA_865117g0010	EDF4, RAV1	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.02	OrthoFinder output from all 47 species
Pir_g14845	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Pnu_g23521	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011516	EDF2, AtRAV2,...	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Zm00001e000156_P001	NGA3, Zm00001e000156	transcription factor (RAV/NGATHA)	0.02	OrthoFinder output from all 47 species
Zm00001e016956_P001	EDF2, AtRAV2,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.02	OrthoFinder output from all 47 species
Zm00001e023240_P001	NGA3, Zm00001e023240	transcription factor (RAV/NGATHA)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004497	monooxygenase activity	IEP	HCCA
MF	GO:0005506	iron ion binding	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
BP	GO:0010215	cellulose microfibril organization	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
BP	GO:0030198	extracellular matrix organization	IEP	HCCA
BP	GO:0043062	extracellular structure organization	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	260	352
IPR001471	AP2/ERF_dom	81	129

External Links

No external refs found!

Dde_g27008 (EDF3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation