Lfl_g18438 (VPS28-2, VPS28-1)

Aliases : VPS28-2, VPS28-1

Description : component *(VPS28) of ESCRT-I complex & original description: none

Gene families : OG0005158 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005158_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g18438

Target	Alias	Description	ECC score	Gene Family Method
Aob_g13306	VPS28-2, VPS28-1	component *(VPS28) of ESCRT-I complex & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene59017.t1	VPS28-1, Aspi01Gene59017	component *(VPS28) of ESCRT-I complex & original...	0.03	OrthoFinder output from all 47 species
Dac_g10515	VPS28-2, VPS28-1	component *(VPS28) of ESCRT-I complex & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01006715001	VPS28-2, VPS28-1	Vesicle trafficking.endomembrane trafficking.ESCRT...	0.03	OrthoFinder output from all 47 species
LOC_Os01g57260.1	VPS28-1, LOC_Os01g57260	component VPS28 of ESCRT-I complex	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012059	VPS28-1	component *(VPS28) of ESCRT-I complex & original...	0.02	OrthoFinder output from all 47 species
Zm00001e019625_P001	VPS28-1, Zm00001e019625	component VPS28 of ESCRT-I complex	0.02	OrthoFinder output from all 47 species
Zm00001e028948_P001	VPS28-1, Zm00001e028948	component VPS28 of ESCRT-I complex	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000813	ESCRT I complex	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0016197	endosomal transport	None	Extended
BP	GO:0032509	endosome transport via multivesicular body sorting pathway	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0036452	ESCRT complex	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0071985	multivesicular body sorting pathway	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
MF	GO:0061630	ubiquitin protein ligase activity	IEP	HCCA
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007143	Vps28	63	247

External Links

No external refs found!