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  5. Dde_g26366

Dde_g26366


Description : plastidial RNA splicing factor *(HPE1) & original description: none


Gene families : OG0007581 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007581_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g26366
Cluster HCCA: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
AT1G70200 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 OrthoFinder output from all 47 species
Adi_g012143 No alias plastidial RNA splicing factor *(HPE1) & original... 0.05 OrthoFinder output from all 47 species
Als_g57142 No alias plastidial RNA splicing factor *(HPE1) & original... 0.04 OrthoFinder output from all 47 species
Aop_g13535 No alias plastidial RNA splicing factor *(HPE1) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0052.g031623 No alias plastidial RNA splicing factor *(HPE1) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g01458 No alias plastidial RNA splicing factor *(HPE1) & original... 0.05 OrthoFinder output from all 47 species
Len_g14318 No alias plastidial RNA splicing factor *(HPE1) & original... 0.03 OrthoFinder output from all 47 species
Mp1g21620.1 No alias HPE1 plastidial RNA splicing factor 0.02 OrthoFinder output from all 47 species
Nbi_g24330 No alias plastidial RNA splicing factor *(HPE1) & original... 0.04 OrthoFinder output from all 47 species
Ore_g06305 No alias plastidial RNA splicing factor *(HPE1) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g57473 No alias plastidial RNA splicing factor *(HPE1) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015456 No alias plastidial RNA splicing factor *(HPE1) & original... 0.03 OrthoFinder output from all 47 species
Sam_g15062 No alias plastidial RNA splicing factor *(HPE1) & original... 0.03 OrthoFinder output from all 47 species
Smo442087 No alias RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
Solyc05g006070.4.1 Solyc05g006070 HPE1 plastidial RNA splicing factor 0.02 OrthoFinder output from all 47 species
Spa_g30782 No alias plastidial RNA splicing factor *(HPE1) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e013842_P001 Zm00001e013842 HPE1 plastidial RNA splicing factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!