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  5. Dde_g24618

Dde_g24618


Description : ribosome biogenesis GTPase *(RgbA) & original description: none


Gene families : OG0006215 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006215_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g24618
Cluster HCCA: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00070p00106620 evm_27.TU.AmTr_v1... DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Ala_g05927 No alias ribosome biogenesis GTPase *(RgbA) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g01311 No alias ribosome biogenesis GTPase *(RgbA) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g10973 No alias ribosome biogenesis GTPase *(RgbA) & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g15491 No alias ribosome biogenesis GTPase *(RgbA) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01011078001 No alias DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Mp1g13850.1 No alias DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Ore_g38635 No alias ribosome biogenesis GTPase *(RgbA) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c16_16460V3.1 Pp3c16_16460 GTP-binding family protein 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008458 No alias ribosome biogenesis GTPase *(RgbA) & original... 0.04 OrthoFinder output from all 47 species
Sam_g35590 No alias ribosome biogenesis GTPase *(RgbA) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e031798_P004 Zm00001e031798 DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
BP GO:0010024 phytochromobilin biosynthetic process IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0043650 dicarboxylic acid biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0050897 cobalt ion binding IEP HCCA
BP GO:0051202 phytochromobilin metabolic process IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR006073 GTP-bd 212 269
No external refs found!