MA_10437243g0010


Description : 27.1.20 RNA.processing.degradation dicer Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs. dicer-like 1 (DCL1)


Gene families : OG_01_0000130 (Gene family) Phylogenetic Tree(s): OG0000130_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): MA_10437243g0010
Cluster HCCA cluster: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
AT1G01040 DCL1, CAF,... dicer-like 1 0.06 Gene family
AT3G03300 ATDCL2, DCL2 dicer-like 2 0.06 Gene family
AT5G20320 DCL4, ATDCL4 dicer-like 4 0.05 Gene family
GSVIVT01027462001 No alias 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.02 Gene family
GSVIVT01035494001 No alias No description available 0.02 Gene family
MA_10432726g0010 No alias 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.02 Gene family
MA_10436812g0020 No alias 27.1.20 RNA.processing.degradation dicer Encodes an... 0.01 Gene family
MA_3182872g0010 No alias 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.02 Gene family
Smo444049 PACid_15413649 27.1.20 RNA.processing.degradation dicer Encodes an... 0.02 Gene family
Smo74321 PACid_15409014 27.1.20 RNA.processing.degradation dicer Encodes an... 0.02 Gene family
Smo86110 PACid_15420555 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.04 Gene family
Solyc07g005030.3.1 Solyc07g005030.3 27.1.20 RNA.processing.degradation dicer Encodes an... 0.02 Gene family
Solyc08g067210.3.1 Solyc08g067210.3 No description available 0.02 Gene family
Zm00001d025830 GRMZM2G024466,... 27.1.20 RNA.processing.degradation dicer Encodes an... 0.02 Gene family
Zm00001d042432 GRMZM5G814985 No description available 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000999 RNase_III_dom 647 685
IPR000999 RNase_III_dom 421 571
IPR003100 PAZ_dom 253 383
No external refs found!