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  5. Lfl_g18003

Lfl_g18003 (APUM24, PUM24)


Aliases : APUM24, PUM24

Description : rRNA processing factor involved in ITS2 rRNA removal *(APUM24) & original description: none


Gene families : OG0004290 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004290_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g18003
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000615.61 APUM24, PUM24 Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Cre12.g528950 APUM24, PUM24 Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Dac_g10024 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.03 OrthoFinder output from all 47 species
Dcu_g01831 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.05 OrthoFinder output from all 47 species
Gb_02879 APUM24, PUM24 APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.03 OrthoFinder output from all 47 species
Msp_g14632 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.06 OrthoFinder output from all 47 species
Sam_g11002 No alias rRNA processing factor involved in ITS2 rRNA removal... 0.02 OrthoFinder output from all 47 species
Solyc01g065580.4.1 APUM24, PUM24,... APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.03 OrthoFinder output from all 47 species
Spa_g12081 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.03 OrthoFinder output from all 47 species
Zm00001e006271_P002 APUM24, PUM24,... APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR012959 CPL_dom 492 602
IPR001313 Pumilio_RNA-bd_rpt 179 201
IPR001313 Pumilio_RNA-bd_rpt 240 272
IPR001313 Pumilio_RNA-bd_rpt 204 237
No external refs found!