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  5. Dde_g20959

Dde_g20959 (PTAC2)


Aliases : PTAC2

Description : cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2) & original description: none


Gene families : OG0008467 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008467_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g20959

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00097240 PTAC2,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 OrthoFinder output from all 47 species
GSVIVT01007844001 PTAC2 RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 OrthoFinder output from all 47 species
LOC_Os03g60910.1 PTAC2, LOC_Os03g60910 PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species
Lfl_g06742 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.02 OrthoFinder output from all 47 species
Pir_g12225 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0150.g023343 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 406 454
IPR002885 Pentatricopeptide_repeat 476 523
IPR002885 Pentatricopeptide_repeat 690 718
IPR002885 Pentatricopeptide_repeat 203 224
IPR002885 Pentatricopeptide_repeat 658 681
IPR002885 Pentatricopeptide_repeat 580 630
IPR002885 Pentatricopeptide_repeat 254 313
IPR002885 Pentatricopeptide_repeat 748 793
IPR002885 Pentatricopeptide_repeat 325 385
No external refs found!