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  5. Dde_g18713

Dde_g18713


Description : not classified & original description: none


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g18713

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00240990 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g55630... 0.02 OrthoFinder output from all 47 species
AMTR_s00033p00156340 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80550,... 0.02 OrthoFinder output from all 47 species
AMTR_s00105p00044870 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g71060,... 0.03 OrthoFinder output from all 47 species
AT1G02420 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G15010 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G65820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
Adi_g023342 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g057448 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058761 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g059638 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g103303 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07362 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g15680 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g54972 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g11814 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g14296 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g31482 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g78360 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G098700.1 Ceric.03G098700 not classified & original description: pacid=50572397... 0.02 OrthoFinder output from all 47 species
Ceric.24G045100.1 Ceric.24G045100 not classified & original description: pacid=50628969... 0.04 OrthoFinder output from all 47 species
Dac_g07047 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g05532 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08151 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g09971 No alias group-II intron mitochondrial splicing factor *(MISF68)... 0.03 OrthoFinder output from all 47 species
Dcu_g10522 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01002056001 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.03 OrthoFinder output from all 47 species
GSVIVT01007280001 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.03 OrthoFinder output from all 47 species
GSVIVT01008815001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.02 OrthoFinder output from all 47 species
GSVIVT01015982001 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.02 OrthoFinder output from all 47 species
GSVIVT01017111001 No alias Pentatricopeptide repeat-containing protein At3g16010... 0.02 OrthoFinder output from all 47 species
GSVIVT01027388001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.02 OrthoFinder output from all 47 species
Gb_20750 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.02 OrthoFinder output from all 47 species
Gb_31888 No alias Pentatricopeptide repeat-containing protein At1g52640,... 0.02 OrthoFinder output from all 47 species
LOC_Os01g05860.1 LOC_Os01g05860 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os02g52220.1 LOC_Os02g52220 Pentatricopeptide repeat-containing protein At1g73400,... 0.01 OrthoFinder output from all 47 species
Len_g19159 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g02336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06036 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07415 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g11461 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g28170 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_355286g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.03 OrthoFinder output from all 47 species
MA_39587g0010 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.03 OrthoFinder output from all 47 species
MA_455059g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_8206159g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.02 OrthoFinder output from all 47 species
Mp4g20290.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.02 OrthoFinder output from all 47 species
Msp_g07146 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g27283 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g15803 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03184 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g17038 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24474 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g006850.1.1 Solyc01g006850 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Solyc03g117570.3.1 Solyc03g117570 Pentatricopeptide repeat-containing protein At1g80880,... 0.03 OrthoFinder output from all 47 species
Solyc04g071280.3.1 Solyc04g071280 Pentatricopeptide repeat-containing protein At3g61360... 0.02 OrthoFinder output from all 47 species
Solyc04g079150.1.1 Solyc04g079150 Pentatricopeptide repeat-containing protein At1g73400,... 0.03 OrthoFinder output from all 47 species
Solyc12g043100.2.1 Solyc12g043100 group-II intron mitochondrial splicing factor (MISF68) 0.05 OrthoFinder output from all 47 species
Spa_g12536 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g09961 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10641 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e005446_P003 Zm00001e005446 group-II intron mitochondrial splicing factor (MISF68) 0.02 OrthoFinder output from all 47 species
Zm00001e036197_P001 Zm00001e036197 Pentatricopeptide repeat-containing protein At1g71060,... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0070403 NAD+ binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 189 219
IPR002885 Pentatricopeptide_repeat 437 461
IPR002885 Pentatricopeptide_repeat 540 569
IPR002885 Pentatricopeptide_repeat 226 253
IPR002885 Pentatricopeptide_repeat 327 375
IPR002885 Pentatricopeptide_repeat 259 304
IPR002885 Pentatricopeptide_repeat 469 515
IPR002885 Pentatricopeptide_repeat 393 425
No external refs found!