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  5. Lfl_g16636

Lfl_g16636 (ATHMG, HMG, SSRP1, NFD)


Aliases : ATHMG, HMG, SSRP1, NFD

Description : component *(SSRP) of FACT histone chaperone complex & original description: none


Gene families : OG0000849 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0000849_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g16636

Target Alias Description ECC score Gene Family Method Actions
Aev_g30225 ATHMG, HMG, SSRP1, NFD component *(SSRP) of FACT histone chaperone complex &... 0.01 OrthoFinder output from all 39 species
Als_g28276 ATHMG, HMG, SSRP1, NFD component *(SSRP) of FACT histone chaperone complex &... 0.02 OrthoFinder output from all 39 species
Aop_g01350 ATHMG, HMG, SSRP1, NFD component *(SSRP) of FACT histone chaperone complex &... 0.02 OrthoFinder output from all 39 species
Dcu_g01651 ATHMG, HMG, SSRP1, NFD component *(SSRP) of FACT histone chaperone complex &... 0.01 OrthoFinder output from all 39 species
Ore_g01090 ATHMG, HMG, SSRP1, NFD component *(SSRP) of FACT histone chaperone complex &... 0.01 OrthoFinder output from all 39 species
Pir_g02282 ATHMG, HMG, SSRP1, NFD component *(SSRP) of FACT histone chaperone complex &... 0.01 OrthoFinder output from all 39 species
Pir_g26685 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.01 OrthoFinder output from all 39 species
Sacu_v1.1_s0161.g023935 ATHMG, HMG, SSRP1, NFD component *(SSRP) of FACT histone chaperone complex &... 0.01 OrthoFinder output from all 39 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR013719 RTT106/SPT16-like_middle_dom 351 443
IPR009071 HMG_box_dom 563 631
IPR024954 SSRP1_DD 108 177
IPR035417 SSRP1/POB3_N 8 100
No external refs found!