Aliases : PCFS4
Description : component *(Pcf11) of Cleavage Factor II (CF-IIm) complex & original description: none
Gene families : OG0001185 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001185_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00040p00210200 | evm_27.TU.AmTr_v1... | RNA processing.RNA 3-end polyadenylation.Cleavage Factor... | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00062p00031880 | PCFS4,... | RNA processing.RNA 3-end polyadenylation.Cleavage Factor... | 0.02 | OrthoFinder output from all 47 species | |
AT2G36480 | No alias | ENTH/VHS family protein | 0.02 | OrthoFinder output from all 47 species | |
Adi_g021559 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
Adi_g060938 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
Adi_g086291 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
Aev_g18258 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
Aev_g18266 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
Ala_g10884 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.05 | OrthoFinder output from all 47 species | |
Ala_g11854 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.06 | OrthoFinder output from all 47 species | |
Ala_g21890 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
Als_g32504 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
Als_g60779 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
Aob_g04503 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g13602 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
Aop_g22117 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.05 | OrthoFinder output from all 47 species | |
Aop_g31315 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0116.g046372 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
Cba_g77134 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.04G047300.1 | Ceric.04G047300 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.08 | OrthoFinder output from all 47 species | |
Ceric.20G037600.1 | Ceric.20G037600 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.05 | OrthoFinder output from all 47 species | |
Ceric.39G023900.1 | PCFS4, Ceric.39G023900 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.05 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000396.26 | No alias | RNA processing.RNA 3-end polyadenylation.Cleavage Factor... | 0.01 | OrthoFinder output from all 47 species | |
Dac_g13952 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g09800 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.09 | OrthoFinder output from all 47 species | |
Dde_g00973 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
Dde_g00986 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
Ehy_g07114 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g07144 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01012646001 | PCFS4 | RNA processing.RNA 3-end polyadenylation.Cleavage Factor... | 0.08 | OrthoFinder output from all 47 species | |
GSVIVT01033783001 | No alias | RNA processing.RNA 3-end polyadenylation.Cleavage Factor... | 0.05 | OrthoFinder output from all 47 species | |
Gb_21315 | PCFS4 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.04 | OrthoFinder output from all 47 species | |
Gb_26268 | PCFS4 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.06 | OrthoFinder output from all 47 species | |
LOC_Os08g08830.1 | PCFS4, LOC_Os08g08830 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os09g39270.1 | LOC_Os09g39270 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.03 | OrthoFinder output from all 47 species | |
Len_g08651 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
Len_g09019 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
MA_10040687g0010 | PCFS4 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.03 | OrthoFinder output from all 47 species | |
MA_10433250g0020 | PCFS4 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.03 | OrthoFinder output from all 47 species | |
MA_132868g0010 | No alias | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.04 | OrthoFinder output from all 47 species | |
Mp8g18940.1 | No alias | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.05 | OrthoFinder output from all 47 species | |
Msp_g36985 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
Nbi_g08557 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
Ore_g13187 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ore_g43016 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.07 | OrthoFinder output from all 47 species | |
Pir_g02318 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
Pnu_g26223 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
Pnu_g32087 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g57483 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0039.g012185 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g12428 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
Solyc09g009120.4.1 | Solyc09g009120 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.02 | OrthoFinder output from all 47 species | |
Solyc10g083590.2.1 | Solyc10g083590 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.04 | OrthoFinder output from all 47 species | |
Solyc12g094490.2.1 | PCFS4, Solyc12g094490 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.03 | OrthoFinder output from all 47 species | |
Spa_g04862 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
Spa_g05766 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.05 | OrthoFinder output from all 47 species | |
Tin_g06139 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e009485_P001 | Zm00001e009485 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.09 | OrthoFinder output from all 47 species | |
Zm00001e021648_P002 | PCFS4, Zm00001e021648 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.08 | OrthoFinder output from all 47 species | |
Zm00001e033620_P001 | Zm00001e033620 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.07 | OrthoFinder output from all 47 species | |
Zm00001e039948_P002 | PCFS4, Zm00001e039948 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.08 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0004672 | protein kinase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006468 | protein phosphorylation | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0006890 | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum | IEP | HCCA |
BP | GO:0008150 | biological_process | IEP | HCCA |
BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016192 | vesicle-mediated transport | IEP | HCCA |
BP | GO:0016310 | phosphorylation | IEP | HCCA |
MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | HCCA |
BP | GO:0031047 | RNA-mediated gene silencing | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0048193 | Golgi vesicle transport | IEP | HCCA |
BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
MF | GO:0051540 | metal cluster binding | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR006569 | CID_dom | 664 | 767 |
No external refs found! |