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  5. Dde_g04017

Dde_g04017 (RNA_POL_II_LSRNA_POL_I...)


Aliases : RNA_POL_II_LSRNA_POL_II_LS, NRPB1, RPB1, RNA_POL_II_LS

Description : component *(NRPB1) of RNA polymerase II complex & original description: none


Gene families : OG0003577 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003577_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g04017
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00152770 RNA_POL_II_LSRNA_... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 OrthoFinder output from all 47 species
AT4G35800 RNA_POL_II_LSRNA_... RNA polymerase II large subunit 0.03 OrthoFinder output from all 47 species
Dcu_g02060 RNA_POL_II_LSRNA_... component *(NRPB1) of RNA polymerase II complex &... 0.04 OrthoFinder output from all 47 species
Lfl_g08690 RNA_POL_II_LSRNA_... component *(NRPB1) of RNA polymerase II complex &... 0.02 OrthoFinder output from all 47 species
Mp4g14340.1 RNA_POL_II_LSRNA_... subunit 1 of Pol II RNA polymerase 0.02 OrthoFinder output from all 47 species
Nbi_g12702 RNA_POL_II_LSRNA_... component *(NRPB1) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Ore_g27265 RNA_POL_II_LSRNA_... component *(NRPB1) of RNA polymerase II complex &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014794 RNA_POL_II_LSRNA_... component *(NRPB1) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Sam_g30215 No alias component *(NRPB1) of RNA polymerase II complex &... 0.04 OrthoFinder output from all 47 species
Smo110201 RNA_POL_II_LSRNA_... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 OrthoFinder output from all 47 species
Solyc02g083350.4.1 RNA_POL_II_LSRNA_... DNA-directed RNA polymerase II subunit 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g08443 RNA_POL_II_LSRNA_... component *(NRPB1) of RNA polymerase II complex &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006366 transcription by RNA polymerase II IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR007083 RNA_pol_Rpb1_4 717 820
IPR007081 RNA_pol_Rpb1_5 827 1416
IPR007066 RNA_pol_Rpb1_3 526 689
IPR007080 RNA_pol_Rpb1_1 14 352
IPR007073 RNA_pol_Rpb1_7 1162 1295
IPR007075 RNA_pol_Rpb1_6 893 1077
IPR000722 RNA_pol_asu 354 522
IPR000684 RNA_pol_II_repeat_euk 1671 1684
IPR000684 RNA_pol_II_repeat_euk 1777 1789
IPR000684 RNA_pol_II_repeat_euk 1566 1579
IPR000684 RNA_pol_II_repeat_euk 1790 1803
IPR000684 RNA_pol_II_repeat_euk 1706 1719
IPR000684 RNA_pol_II_repeat_euk 1636 1649
IPR000684 RNA_pol_II_repeat_euk 1720 1733
IPR000684 RNA_pol_II_repeat_euk 1573 1586
IPR000684 RNA_pol_II_repeat_euk 1685 1698
IPR000684 RNA_pol_II_repeat_euk 1615 1628
IPR000684 RNA_pol_II_repeat_euk 1692 1705
IPR000684 RNA_pol_II_repeat_euk 1657 1670
IPR000684 RNA_pol_II_repeat_euk 1629 1642
IPR000684 RNA_pol_II_repeat_euk 1678 1691
IPR000684 RNA_pol_II_repeat_euk 1664 1677
IPR000684 RNA_pol_II_repeat_euk 1587 1600
IPR000684 RNA_pol_II_repeat_euk 1650 1663
IPR000684 RNA_pol_II_repeat_euk 1552 1565
IPR000684 RNA_pol_II_repeat_euk 1699 1712
IPR000684 RNA_pol_II_repeat_euk 1643 1656
IPR000684 RNA_pol_II_repeat_euk 1762 1775
IPR000684 RNA_pol_II_repeat_euk 1601 1614
IPR000684 RNA_pol_II_repeat_euk 1545 1558
IPR000684 RNA_pol_II_repeat_euk 1734 1747
IPR000684 RNA_pol_II_repeat_euk 1559 1572
IPR000684 RNA_pol_II_repeat_euk 1580 1593
No external refs found!