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  5. Dde_g03993

Dde_g03993


Description : not classified & original description: none


Gene families : OG0005967 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005967_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g03993
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
AT4G30825 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Aev_g01555 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g04893 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21865 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene09212.t1 Aspi01Gene09212 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g12627 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.19G065200.1 Ceric.19G065200 not classified & original description: pacid=50576378... 0.03 OrthoFinder output from all 47 species
Dcu_g06462 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g05044 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01014050001 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 OrthoFinder output from all 47 species
LOC_Os09g25550.1 LOC_Os09g25550 Pentatricopeptide repeat-containing protein At4g30825,... 0.03 OrthoFinder output from all 47 species
Len_g12313 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_187850g0010 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 OrthoFinder output from all 47 species
Mp1g07710.1 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 OrthoFinder output from all 47 species
Nbi_g36090 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g58424 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012097 No alias not classified & original description: CDS=661-1995 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0063.g015623 No alias not classified & original description: CDS=1-2238 0.03 OrthoFinder output from all 47 species
Sam_g13761 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25071 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g13974 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e040095_P002 Zm00001e040095 Pentatricopeptide repeat-containing protein At4g30825,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 461 487
IPR002885 Pentatricopeptide_repeat 495 520
IPR002885 Pentatricopeptide_repeat 529 559
IPR033443 PPR_long 120 249
IPR002885 Pentatricopeptide_repeat 54 94
IPR002885 Pentatricopeptide_repeat 349 393
IPR002885 Pentatricopeptide_repeat 586 644
IPR002885 Pentatricopeptide_repeat 669 712
No external refs found!