Dde_g03005

Description : RNA helicase *(Brr2) & original description: none

Gene families : OG0001175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001175_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dde_g03005

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00110p00146400	evm_27.TU.AmTr_v1...	DExH-box ATP-dependent RNA helicase DExH14...	0.04	OrthoFinder output from all 47 species
AT5G61140	No alias	U5 small nuclear ribonucleoprotein helicase	0.04	OrthoFinder output from all 47 species
Ceric.1Z134800.1	Ceric.1Z134800	not classified & original description: pacid=50597112...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000865.27	emb1507	DExH-box ATP-dependent RNA helicase DExH12...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000865.28	emb1507	DExH-box ATP-dependent RNA helicase DExH12...	0.01	OrthoFinder output from all 47 species
GSVIVT01007875001	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.06	OrthoFinder output from all 47 species
LOC_Os03g11470.1	LOC_Os03g11470	DExH-box ATP-dependent RNA helicase DExH14...	0.04	OrthoFinder output from all 47 species
MA_10429486g0010	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.05	OrthoFinder output from all 47 species
MA_10434882g0010	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.05	OrthoFinder output from all 47 species
MA_8113344g0010	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.05	OrthoFinder output from all 47 species
MA_81219g0020	emb1507	DExH-box ATP-dependent RNA helicase DExH12...	0.03	OrthoFinder output from all 47 species
MA_81219g0030	emb1507	DExH-box ATP-dependent RNA helicase DExH12...	0.07	OrthoFinder output from all 47 species
MA_930633g0010	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.06	OrthoFinder output from all 47 species
Smo178863	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.02	OrthoFinder output from all 47 species
Solyc06g069480.3.1	Solyc06g069480	DExH-box ATP-dependent RNA helicase DExH14...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	HCCA
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	HCCA
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
BP	GO:0009250	glucan biosynthetic process	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	467	641
IPR004179	Sec63-dom	1797	2113
IPR004179	Sec63-dom	966	1272
IPR011545	DEAD/DEAH_box_helicase_dom	1315	1480
IPR001650	Helicase_C	1593	1678
IPR001650	Helicase_C	697	842

External Links

No external refs found!

Dde_g03005

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation