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  5. Dde_g02392

Dde_g02392 (PUM1, APUM1)


Aliases : PUM1, APUM1

Description : not classified & original description: none


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g02392

Target Alias Description ECC score Gene Family Method Actions
AT2G29190 APUM2, PUM2 pumilio 2 0.02 OrthoFinder output from all 47 species
Als_g61874 APUM4, PUM4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06713 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene56545.t1 PUM3, APUM3,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cre07.g328250 No alias Pumilio homolog 6, chloroplastic OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dac_g04724 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g74030.1 PUM1, APUM1,... Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Lfl_g10215 APUM4, PUM4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g09055 APUM4, PUM4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g36029 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g12530 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g25298 PUM3, APUM3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55430 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e027653_P001 PUM1, APUM1,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003968 RNA-dependent RNA polymerase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR012940 NABP 345 753
IPR001313 Pumilio_RNA-bd_rpt 798 827
IPR001313 Pumilio_RNA-bd_rpt 758 792
IPR001313 Pumilio_RNA-bd_rpt 872 897
IPR001313 Pumilio_RNA-bd_rpt 830 863
IPR001313 Pumilio_RNA-bd_rpt 1021 1050
IPR001313 Pumilio_RNA-bd_rpt 975 1009
IPR001313 Pumilio_RNA-bd_rpt 902 937
IPR001313 Pumilio_RNA-bd_rpt 941 972
No external refs found!